{
    "type": "genome",
    "identifier": "GCF_001721045.1",
    "organism": "Paenibacillus nuruki",
    "title": "Paenibacillus nuruki",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Academy of Agrigultural Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001721045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05526182",
        "wgs_master": "MDER00000000.1",
        "refseq_category": "na",
        "taxid": "1886670",
        "species_taxid": "1886670",
        "organism_name": "Paenibacillus nuruki",
        "infraspecific_name": "strain=TI45-13ar",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/07",
        "asm_name": "ASM172104v1",
        "asm_submitter": "National Academy of Agrigultural Science",
        "gbrs_paired_asm": "GCA_001721045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/721/045/GCF_001721045.1_ASM172104v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5360385",
        "genome_size_ungapped": "5360385",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "116",
        "contig_count": "116",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001721045.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4768",
        "protein_coding_gene_count": "4652",
        "non_coding_gene_count": "91",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-07",
    "dateModified": "2016-09-07",
    "datePublished": "2016-09-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus nuruki"
        ],
        "sample_taxid": [
            "1886670"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.523 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5360385",
        "Number of Sequences": "116",
        "Longest Sequences (bp)": "469855",
        "N50 (bp)": "140110",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.0",
        "Number of CDSs": "4657",
        "Average Protein Length": "327.1",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus nuruki",
                "strain": "strain=TI45-13ar",
                "accession": "GCA_001721045.1",
                "taxid": 1886670,
                "species_taxid": 1886670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1730,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus wulumuqiensis",
                "strain": "strain=Y24",
                "accession": "GCA_000971965.1",
                "taxid": 1567107,
                "species_taxid": 1567107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2685,
                "matched_fragments": 331,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus bovis",
                "strain": "strain=BD3526",
                "accession": "GCA_001421015.2",
                "taxid": 1616788,
                "species_taxid": 1616788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1478,
                "matched_fragments": 390,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus dauci",
                "strain": "strain=H9",
                "accession": "GCA_000971985.1",
                "taxid": 1567106,
                "species_taxid": 1567106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1059,
                "matched_fragments": 393,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus hunanensis",
                "strain": "strain=CGMCC 1.8907",
                "accession": "GCA_014645615.1",
                "taxid": 539262,
                "species_taxid": 539262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5581,
                "matched_fragments": 344,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus antarcticus",
                "strain": "strain=CECT 5836",
                "accession": "GCA_001637225.1",
                "taxid": 253703,
                "species_taxid": 253703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3868,
                "matched_fragments": 95,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pabuli",
                "strain": "strain=NBRC 13638",
                "accession": "GCA_001514495.1",
                "taxid": 1472,
                "species_taxid": 1472,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.3743,
                "matched_fragments": 105,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macquariensis subsp. macquariensis",
                "strain": "strain=DSM 2",
                "accession": "GCA_001637165.1",
                "taxid": 1468,
                "species_taxid": 948756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3099,
                "matched_fragments": 104,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanexedens",
                "strain": "strain=DSM 21292",
                "accession": "GCA_017874615.1",
                "taxid": 528191,
                "species_taxid": 528191,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1325,
                "matched_fragments": 121,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus silvae",
                "strain": "strain=CGMCC 1.12770",
                "accession": "GCA_014639235.1",
                "taxid": 1325358,
                "species_taxid": 1325358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1158,
                "matched_fragments": 90,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macquariensis",
                "strain": "strain=ATCC 23464",
                "accession": "GCA_900156375.1",
                "taxid": 948756,
                "species_taxid": 948756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0957,
                "matched_fragments": 104,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus taichungensis",
                "strain": "strain=DSM 19942",
                "accession": "GCA_013359905.1",
                "taxid": 484184,
                "species_taxid": 484184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0585,
                "matched_fragments": 110,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus crassostreae",
                "strain": "strain=LPB0068",
                "accession": "GCA_001857945.1",
                "taxid": 1763538,
                "species_taxid": 1763538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9803,
                "matched_fragments": 96,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus gallinarum",
                "strain": "strain=Sa2BVA9",
                "accession": "GCA_014836635.1",
                "taxid": 2762232,
                "species_taxid": 2762232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8482,
                "matched_fragments": 108,
                "total_fragments": 1733,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001721045.1",
                "gtdb_species": "s__Paenibacillus_J nuruki",
                "ani": 100.0,
                "matched_fragments": 1730,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016908805.1",
                "gtdb_species": "s__Paenibacillus_J nicotianae",
                "ani": 87.7111,
                "matched_fragments": 1481,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000971965.1",
                "gtdb_species": "s__Paenibacillus_J wulumuqiensis",
                "ani": 78.2536,
                "matched_fragments": 332,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001421015.2",
                "gtdb_species": "s__Paenibacillus_J bovis",
                "ani": 78.1497,
                "matched_fragments": 388,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000971985.1",
                "gtdb_species": "s__Paenibacillus_J dauci",
                "ani": 78.1047,
                "matched_fragments": 392,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014645615.1",
                "gtdb_species": "s__Paenibacillus_J hunanensis",
                "ani": 77.5643,
                "matched_fragments": 342,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_J",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003287275.1",
                "gtdb_species": "s__Paenibacillus taichungensis_A",
                "ani": 77.3884,
                "matched_fragments": 98,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001637205.1",
                "gtdb_species": "s__Paenibacillus glacialis",
                "ani": 77.2336,
                "matched_fragments": 87,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007680605.1",
                "gtdb_species": "s__Paenibacillus xylanexedens_B",
                "ani": 77.1253,
                "matched_fragments": 94,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009363115.1",
                "gtdb_species": "s__Paenibacillus brasilensis",
                "ani": 76.9833,
                "matched_fragments": 90,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012912005.1",
                "gtdb_species": "s__Paenibacillus sp012912005",
                "ani": 76.9598,
                "matched_fragments": 123,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836635.1",
                "gtdb_species": "s__Paenibacillus sp014836635",
                "ani": 76.7688,
                "matched_fragments": 106,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003719335.1",
                "gtdb_species": "s__Paenibacillus amylolyticus_D",
                "ani": 76.5714,
                "matched_fragments": 110,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000943545.1",
                "gtdb_species": "s__Paenibacillus terrae_A",
                "ani": 76.4914,
                "matched_fragments": 98,
                "total_fragments": 1733,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
        "optimum_tmp": 31.323,
        "optimum_ph": 7.238,
        "genome_size": 6197949.921,
        "gc_content": 50.283,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.918,
        "range_salinity": 0.0,
        "facultative_respiration": 0.347,
        "anaerobic_respiration": 0.007,
        "aerobic_respiration": 0.645,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "nuruki"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}