{ "type": "genome", "identifier": "GCF_001723285.1", "organism": "Methyloceanibacter methanicus", "title": "Methyloceanibacter methanicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001723285.1", "bioproject": "PRJNA224116", "biosample": "SAMN04328993", "wgs_master": "LPWG00000000.1", "refseq_category": "reference genome", "taxid": "1774968", "species_taxid": "1774968", "organism_name": "Methyloceanibacter methanicus", "infraspecific_name": "strain=R-67174", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/12", "asm_name": "ASM172328v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_001723285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/285/GCF_001723285.1_ASM172328v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3139022", "genome_size_ungapped": "3139022", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001723285.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "3222", "protein_coding_gene_count": "2987", "non_coding_gene_count": "54", "pubmed_id": "27501305" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-12", "dateModified": "2016-09-12", "datePublished": "2016-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Methyloceanibacter methanicus" ], "sample_taxid": [ "1774968" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium:North sea" ], "sample_host_location_id": [], "data_size": "0.876 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3139022", "Number of Sequences": "14", "Longest Sequences (bp)": "516846", "N50 (bp)": "384508", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "3240", "Average Protein Length": "280.1", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloceanibacter methanicus", "strain": "strain=R-67174", "accession": "GCA_001723285.1", "taxid": 1774968, "species_taxid": 1774968, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1040, "total_fragments": 1040, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methyloceanibacter stevinii", "strain": "strain=R-67176", "accession": "GCA_001723355.1", "taxid": 1774970, "species_taxid": 1774970, "relation_to_type": "type", "validated": true, "ani": 83.3074, "matched_fragments": 798, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter caenitepidi", "strain": "strain=Gela4", "accession": "GCA_000828475.1", "taxid": 1384459, "species_taxid": 1384459, "relation_to_type": "type", "validated": true, "ani": 82.9727, "matched_fragments": 756, "total_fragments": 1040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter marginalis", "strain": "strain=R-67177", "accession": "GCA_001723295.1", "taxid": 1774971, "species_taxid": 1774971, "relation_to_type": "type", "validated": true, "ani": 79.7015, "matched_fragments": 389, "total_fragments": 1040, "ani_threshold": 95, "status": 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