{ "type": "genome", "identifier": "GCF_001723295.1", "organism": "Methyloceanibacter marginalis", "title": "Methyloceanibacter marginalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001723295.1", "bioproject": "PRJNA224116", "biosample": "SAMN04328996", "wgs_master": "LPWD00000000.1", "refseq_category": "reference genome", "taxid": "1774971", "species_taxid": "1774971", "organism_name": "Methyloceanibacter marginalis", "infraspecific_name": "strain=R-67177", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/12", "asm_name": "ASM172329v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_001723295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/723/295/GCF_001723295.1_ASM172329v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2997425", "genome_size_ungapped": "2997425", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "470", "contig_count": "470", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001723295.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "3614", "protein_coding_gene_count": "3107", "non_coding_gene_count": "49", "pubmed_id": "27501305" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-12", "dateModified": "2016-09-12", "datePublished": "2016-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Methyloceanibacter marginalis" ], "sample_taxid": [ "1774971" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium:North Sea" ], "sample_host_location_id": [], "data_size": "0.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.39, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2997425", "Number of Sequences": "470", "Longest Sequences (bp)": "54751", "N50 (bp)": "9322", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "3090", "Average Protein Length": "242.9", "Coding Ratio (%)": "75.1", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloceanibacter marginalis", "strain": "strain=R-67177", "accession": "GCA_001723295.1", "taxid": 1774971, "species_taxid": 1774971, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 757, "total_fragments": 770, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methyloceanibacter superfactus", "strain": "strain=R-67175", "accession": "GCA_001723305.1", "taxid": 1774969, "species_taxid": 1774969, "relation_to_type": "type", "validated": true, "ani": 81.9335, "matched_fragments": 540, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter methanicus", "strain": "strain=R-67174", "accession": "GCA_001723285.1", "taxid": 1774968, "species_taxid": 1774968, "relation_to_type": "type", "validated": true, "ani": 79.7494, "matched_fragments": 377, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter caenitepidi", "strain": "strain=Gela4", "accession": "GCA_000828475.1", "taxid": 1384459, "species_taxid": 1384459, "relation_to_type": "type", "validated": true, "ani": 79.2969, "matched_fragments": 389, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter stevinii", "strain": "strain=R-67176", "accession": "GCA_001723355.1", "taxid": 1774970, "species_taxid": 1774970, "relation_to_type": "type", "validated": true, "ani": 79.2167, "matched_fragments": 383, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloligella halotolerans", "strain": "strain=VKM B-2706", "accession": "GCA_001708935.1", "taxid": 1177755, "species_taxid": 1177755, "relation_to_type": "type", "validated": true, "ani": 77.9535, "matched_fragments": 226, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 76.8839, "matched_fragments": 159, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", 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