{ "type": "genome", "identifier": "GCF_001729765.1", "organism": "Enterobacter kobei", "title": "Enterobacter kobei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JCVI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001729765.1", "bioproject": "PRJNA224116", "biosample": "SAMN05581747", "wgs_master": "na", "refseq_category": "na", "taxid": "208224", "species_taxid": "208224", "organism_name": "Enterobacter kobei", "infraspecific_name": "strain=DSM 13645", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/16", "asm_name": "ASM172976v1", "asm_submitter": "JCVI", "gbrs_paired_asm": "GCA_001729765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/729/765/GCF_001729765.1_ASM172976v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4927478", "genome_size_ungapped": "4927478", "gc_percent": "55.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "4801", "protein_coding_gene_count": "4526", "non_coding_gene_count": "118", "pubmed_id": "27965456" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-16", "dateModified": "2016-09-16", "datePublished": "2016-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter kobei" ], "sample_taxid": [ "208224" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.395 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4927478", "Number of Sequences": "2", "Longest Sequences (bp)": "4880257", "N50 (bp)": "4880257", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.9", "Number of CDSs": "4730", "Average Protein Length": "308.3", "Coding Ratio (%)": "88.8", "Number of rRNAs": "25", "Number of tRNAs": "88", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1641, "total_fragments": 1641, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 91.4338, "matched_fragments": 1346, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 91.1657, "matched_fragments": 1319, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 91.0425, "matched_fragments": 1337, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 90.9682, "matched_fragments": 1304, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 90.964, "matched_fragments": 1306, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 90.8405, "matched_fragments": 1258, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=FDAARGOS 1430", "accession": "GCA_019047025.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 90.7275, "matched_fragments": 1320, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_001729805.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 90.6775, "matched_fragments": 1328, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter vonholyi", "strain": "strain=E13", "accession": "GCA_008364555.1", "taxid": 2797505, "species_taxid": 2797505, "relation_to_type": "type", "validated": true, "ani": 90.5344, "matched_fragments": 1264, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 89.8884, "matched_fragments": 1272, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 88.4492, "matched_fragments": 1311, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0587, "matched_fragments": 1275, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, 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"GCF_001729765.1", "gtdb_species": "s__Enterobacter kobei", "ani": 100.0, "matched_fragments": 1641, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 141, "status": "conclusive" }, { "accession": "GCF_001984825.2", "gtdb_species": "s__Enterobacter chengduensis", "ani": 91.4421, "matched_fragments": 1346, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 24, "status": "-" }, { "accession": 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null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 30.0, "optimum_ph": 5.75, "genome_size": 4978223.56, "gc_content": 54.986, "coding_genes": 4513.5, "rRNA16S_genes": 8.0, "tRNA_genes": 87.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterobacter", "kobei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }