{ "type": "genome", "identifier": "GCF_001730285.1", "organism": "Enterococcus ureasiticus", "title": "Enterococcus ureasiticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730285.1", "bioproject": "PRJNA224116", "biosample": "SAMN05420582", "wgs_master": "MIJZ00000000.1", "refseq_category": "reference genome", "taxid": "903984", "species_taxid": "903984", "organism_name": "Enterococcus ureasiticus", "infraspecific_name": "strain=DSM 23328", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/16", "asm_name": "ASM173028v1", "asm_submitter": "CDC", "gbrs_paired_asm": "GCA_001730285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/285/GCF_001730285.1_ASM173028v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3585398", "genome_size_ungapped": "3585398", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730285.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3334", "protein_coding_gene_count": "3245", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-16", "dateModified": "2016-09-16", "datePublished": "2016-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus ureasiticus" ], "sample_taxid": [ "903984" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ste-Marie de Beauce" ], "sample_host_location_id": [], "data_size": "1.005 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3585398", "Number of Sequences": "19", "Longest Sequences (bp)": "1219195", "N50 (bp)": "508214", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.8", "Number of CDSs": "3303", "Average Protein Length": "311.6", "Coding Ratio (%)": "86.1", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus ureasiticus", "strain": "strain=DSM 23328", "accession": "GCA_001730285.1", "taxid": 903984, "species_taxid": 903984, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1186, "total_fragments": 1186, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=DSM 15920", "accession": "GCA_001885985.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 86.6357, "matched_fragments": 831, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 86.5864, "matched_fragments": 849, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000393995.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 86.5724, "matched_fragments": 856, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus plantarum", "strain": "strain=LMG 26214", "accession": "GCA_001730295.1", "taxid": 1077675, "species_taxid": 1077675, "relation_to_type": "type", "validated": true, "ani": 85.9317, "matched_fragments": 779, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus crotali", "strain": "strain=ETRF1", "accession": "GCA_000633635.1", "taxid": 1453587, "species_taxid": 1453587, "relation_to_type": "type", "validated": true, "ani": 85.2103, "matched_fragments": 856, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 84.9278, "matched_fragments": 819, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=ATCC BAA-1240", "accession": "GCA_000407145.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 84.3198, "matched_fragments": 802, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rotai", "strain": "strain=LMG 26678", "accession": "GCA_001465345.1", "taxid": 118060, "species_taxid": 118060, "relation_to_type": "type", "validated": true, "ani": 83.8047, "matched_fragments": 794, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 82.6966, "matched_fragments": 712, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "ureasiticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }