{ "type": "genome", "identifier": "GCF_001730305.1", "organism": "Enterococcus termitis", "title": "Enterococcus termitis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730305.1", "bioproject": "PRJNA224116", "biosample": "SAMN05420590", "wgs_master": "MIJY00000000.1", "refseq_category": "na", "taxid": "332950", "species_taxid": "332950", "organism_name": "Enterococcus termitis", "infraspecific_name": "strain=LMG 8895", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/16", "asm_name": "ASM173030v1", "asm_submitter": "CDC", "gbrs_paired_asm": "GCA_001730305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/305/GCF_001730305.1_ASM173030v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4155153", "genome_size_ungapped": "4155153", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730305.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "3989", "protein_coding_gene_count": "3894", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-16", "dateModified": "2016-09-16", "datePublished": "2016-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus termitis" ], "sample_taxid": [ "332950" ], "sample_host_organism": [ "termite" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "1.169 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4155153", "Number of Sequences": "47", "Longest Sequences (bp)": "634766", "N50 (bp)": "274647", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.8", "Number of CDSs": "3980", "Average Protein Length": "299.2", "Coding Ratio (%)": "86.0", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus termitis", "strain": "strain=LMG 8895", "accession": "GCA_001730305.1", "taxid": 332950, "species_taxid": 332950, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1358, "total_fragments": 1360, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus termitis", "strain": "strain=DSM 22803", "accession": "GCA_001886275.1", "taxid": 332950, "species_taxid": 332950, "relation_to_type": "type", "validated": true, "ani": 99.9745, "matched_fragments": 1312, "total_fragments": 1360, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=CGMCC 1.15942", "accession": "GCA_014644255.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 82.1742, "matched_fragments": 788, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=MN05", "accession": "GCA_002197645.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 82.1496, "matched_fragments": 801, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 80.7218, "matched_fragments": 545, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=ATCC BAA-383", "accession": "GCA_000394015.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 80.6986, "matched_fragments": 618, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=ATCC BAA-383", "accession": "GCA_000407445.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 80.6838, "matched_fragments": 609, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=DSM 15919", "accession": "GCA_001886065.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 80.6326, "matched_fragments": 611, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 80.5786, "matched_fragments": 627, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rotai", "strain": "strain=LMG 26678", "accession": "GCA_001465345.1", "taxid": 118060, "species_taxid": 118060, "relation_to_type": "type", "validated": true, "ani": 80.3869, "matched_fragments": 635, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 78.125, "matched_fragments": 137, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 77.6747, "matched_fragments": 136, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 76.9274, "matched_fragments": 119, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001730305.1", "gtdb_species": "s__Enterococcus termitis", "ani": 100.0, "matched_fragments": 1358, 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