{ "type": "genome", "identifier": "GCF_001730365.1", "organism": "Enterococcus quebecensis", "title": "Enterococcus quebecensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730365.1", "bioproject": "PRJNA224116", "biosample": "SAMN05420588", "wgs_master": "MIKB00000000.1", "refseq_category": "reference genome", "taxid": "903983", "species_taxid": "903983", "organism_name": "Enterococcus quebecensis", "infraspecific_name": "strain=LMG 26306", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/16", "asm_name": "ASM173036v1", "asm_submitter": "CDC", "gbrs_paired_asm": "GCA_001730365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/365/GCF_001730365.1_ASM173036v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3162767", "genome_size_ungapped": "3162767", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730365.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2895", "protein_coding_gene_count": "2822", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-16", "dateModified": "2016-09-16", "datePublished": "2016-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus quebecensis" ], "sample_taxid": [ "903983" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: St-Malo, Quebec" ], "sample_host_location_id": [], "data_size": "0.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3162767", "Number of Sequences": "19", "Longest Sequences (bp)": "629420", "N50 (bp)": "361240", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.1", "Number of CDSs": "2858", "Average Protein Length": "314.4", "Coding Ratio (%)": "85.2", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus quebecensis", "strain": "strain=LMG 26306", "accession": "GCA_001730365.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1044, "total_fragments": 1044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 99.9754, "matched_fragments": 1015, "total_fragments": 1044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus ureasiticus", "strain": "strain=DSM 23328", "accession": "GCA_001730285.1", "taxid": 903984, "species_taxid": 903984, "relation_to_type": "type", "validated": true, "ani": 82.6017, "matched_fragments": 729, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000393995.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 82.5612, "matched_fragments": 703, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 82.5177, "matched_fragments": 708, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rotai", "strain": "strain=LMG 26678", "accession": "GCA_001465345.1", "taxid": 118060, "species_taxid": 118060, "relation_to_type": "type", "validated": true, "ani": 82.3054, "matched_fragments": 635, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus plantarum", "strain": "strain=LMG 26214", "accession": "GCA_001730295.1", "taxid": 1077675, "species_taxid": 1077675, "relation_to_type": "type", "validated": true, "ani": 82.2931, "matched_fragments": 628, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 82.288, "matched_fragments": 668, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus crotali", "strain": "strain=ETRF1", "accession": "GCA_000633635.1", "taxid": 1453587, "species_taxid": 1453587, "relation_to_type": "type", "validated": true, "ani": 82.1948, "matched_fragments": 668, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=ATCC BAA-383", "accession": "GCA_000407445.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 81.9488, "matched_fragments": 665, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=ATCC BAA-383", "accession": "GCA_000394015.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 81.9046, "matched_fragments": 667, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=DSM 15919", "accession": "GCA_001886065.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 81.8859, "matched_fragments": 644, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 78.231, "matched_fragments": 231, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.8604, "matched_fragments": 131, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001730365.1", "gtdb_species": "s__Enterococcus quebecensis", "ani": 100.0, "matched_fragments": 1044, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_017377505.1", "gtdb_species": "s__Enterococcus sp017377505", "ani": 83.0863, "matched_fragments": 727, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.67", "min_intra_species_ani": "95.67", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001730285.1", "gtdb_species": "s__Enterococcus ureasiticus", "ani": 82.6021, "matched_fragments": 729, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002141365.1", "gtdb_species": "s__Enterococcus sp002141365", "ani": 82.5515, "matched_fragments": 708, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, 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"99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001465345.1", "gtdb_species": "s__Enterococcus rotai", "ani": 82.294, "matched_fragments": 636, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001730295.1", "gtdb_species": "s__Enterococcus plantarum", "ani": 82.2901, "matched_fragments": 629, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.89", "min_intra_species_af": 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"accession": "GCF_002140715.1", "gtdb_species": "s__Enterococcus sp002140715", "ani": 82.0887, "matched_fragments": 666, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000407445.1", "gtdb_species": "s__Enterococcus moraviensis", "ani": 81.9479, "matched_fragments": 665, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.079, "cell_length": 0.079, "doubling_h": -0.346, "growth_tmp": 37.0, "optimum_tmp": 30.0, "optimum_ph": 8.805, "genome_size": 3255020.058, "gc_content": 38.565, "coding_genes": 2937.768, "rRNA16S_genes": 5.5, "tRNA_genes": 60.871, "gram_stain": 1.0, "sporulation": 0.062, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "quebecensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }