{ "type": "genome", "identifier": "GCF_001730525.1", "organism": "Arcticibacter eurypsychrophilus", "title": "Arcticibacter eurypsychrophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Tibetan Plateau Research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730525.1", "bioproject": "PRJNA224116", "biosample": "SAMN05559869", "wgs_master": "MDFN00000000.1", "refseq_category": "reference genome", "taxid": "1434752", "species_taxid": "1434752", "organism_name": "Arcticibacter eurypsychrophilus", "infraspecific_name": "strain=MJ9-5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/18", "asm_name": "ASM173052v1", "asm_submitter": "Institute of Tibetan Plateau Research", "gbrs_paired_asm": "GCA_001730525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/525/GCF_001730525.1_ASM173052v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4686666", "genome_size_ungapped": "4686666", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730525.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3906", "protein_coding_gene_count": "3825", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-18", "dateModified": "2016-09-18", "datePublished": "2016-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcticibacter eurypsychrophilus" ], "sample_taxid": [ "1434752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibetan Plateau" ], "sample_host_location_id": [], "data_size": "1.337 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4686666", "Number of Sequences": "94", "Longest Sequences (bp)": "375929", "N50 (bp)": "134681", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "3756", "Average Protein Length": "360.7", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcticibacter eurypsychrophilus", "strain": "strain=MJ9-5", "accession": "GCA_001730525.1", "taxid": 1434752, "species_taxid": 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"matched_fragments": 52, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 76.6033, "matched_fragments": 62, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter duraquae", "strain": "strain=DSM 19034", "accession": "GCA_004362245.1", "taxid": 425511, "species_taxid": 425511, "relation_to_type": "type", "validated": true, "ani": 76.5888, "matched_fragments": 53, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ghigonis", "strain": "strain=Marseille-Q2390", "accession": "GCA_903166585.1", "taxid": 2730403, "species_taxid": 2730403, "relation_to_type": "type", "validated": true, "ani": 76.4597, "matched_fragments": 54, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nototheniae", "strain": "strain=36B243", "accession": "GCA_004335085.1", "taxid": 2488994, "species_taxid": 2488994, "relation_to_type": "type", "validated": true, "ani": 76.3822, "matched_fragments": 72, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter gandavensis", "strain": "strain=LMG 31462", "accession": "GCA_014172405.1", "taxid": 2679963, "species_taxid": 2679963, "relation_to_type": "type", "validated": true, "ani": 76.3602, "matched_fragments": 64, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrodurus", "strain": "strain=RP-3-21", "accession": "GCA_004331735.1", "taxid": 2530456, "species_taxid": 2530456, "relation_to_type": "type", "validated": true, "ani": 76.3049, "matched_fragments": 66, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter caeni", "strain": "strain=DSM 16990", "accession": "GCA_900129215.1", "taxid": 288992, "species_taxid": 288992, "relation_to_type": "type", "validated": true, "ani": 76.2659, "matched_fragments": 61, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryoconitis", "strain": "strain=DSM 14825", "accession": "GCA_003259615.1", "taxid": 188932, "species_taxid": 188932, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9492, "matched_fragments": 74, "total_fragments": 1519, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001730525.1", "gtdb_species": "s__Arcticibacter eurypsychrophilus", "ani": 100.0, "matched_fragments": 1511, "total_fragments": 1519, "gtdb_taxonomy": 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Arcticibacter", "eurypsychrophilus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }