{ "type": "genome", "identifier": "GCF_001730605.1", "organism": "Pseudomonas poae", "title": "Pseudomonas poae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ottawa Research and Development Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730605.1", "bioproject": "PRJNA224116", "biosample": "SAMN05560560", "wgs_master": "MDFK00000000.1", "refseq_category": "na", "taxid": "200451", "species_taxid": "200451", "organism_name": "Pseudomonas poae", "infraspecific_name": "strain=LMG 21465", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/18", "asm_name": "ASM173060v1", "asm_submitter": "Ottawa Research and Development Center", "gbrs_paired_asm": "GCA_001730605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/605/GCF_001730605.1_ASM173060v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5996364", "genome_size_ungapped": "5996364", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-10", "total_gene_count": "5458", "protein_coding_gene_count": "5270", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-18", "dateModified": "2016-09-18", "datePublished": "2016-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas poae" ], "sample_taxid": [ "200451" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.681 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5996364", "Number of Sequences": "84", "Longest Sequences (bp)": "373966", "N50 (bp)": "146844", "Gap Ratio (%)": "0.000017", "GCcontent (%)": "60.4", "Number of CDSs": "5304", "Average Protein Length": "323.7", "Coding Ratio (%)": "85.9", "Number of rRNAs": "21", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas poae", "strain": "strain=LMG 21465", "accession": "GCA_001730605.1", "taxid": 200451, "species_taxid": 200451, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1943, "total_fragments": 1953, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas poae", "strain": "strain=DSM 14936", "accession": "GCA_001439785.1", "taxid": 200451, "species_taxid": 200451, "relation_to_type": "type", "validated": true, "ani": 99.9644, "matched_fragments": 1913, "total_fragments": 1953, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas trivialis", "strain": "strain=LMG 21464", "accession": "GCA_001730655.1", "taxid": 200450, "species_taxid": 200450, "relation_to_type": "type", "validated": true, "ani": 93.7629, "matched_fragments": 1629, "total_fragments": 1953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas trivialis", "strain": "strain=DSM 14937", "accession": "GCA_001439805.1", "taxid": 200450, "species_taxid": 200450, "relation_to_type": "type", "validated": true, "ani": 93.7465, "matched_fragments": 1623, "total_fragments": 1953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 87.3473, "matched_fragments": 1463, "total_fragments": 1953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas salomonii", "strain": "strain=ICMP 14252", "accession": "GCA_900107155.1", "taxid": 191391, "species_taxid": 191391, "relation_to_type": "type", "validated": true, "ani": 87.2852, "matched_fragments": 1444, "total_fragments": 1953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cedrina subsp. cedrina", "strain": "", "accession": "GCA_900625035.1", "taxid": 76762, "species_taxid": 651740, "relation_to_type": "type", "validated": true, "ani": 87.2212, "matched_fragments": 1428, "total_fragments": 1953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremaustralis", "strain": "strain=DSM 17835", "accession": "GCA_007858235.1", 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