{ "type": "genome", "identifier": "GCF_001730615.1", "organism": "Pseudomonas simiae", "title": "Pseudomonas simiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ottawa Research and Development Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730615.1", "bioproject": "PRJNA224116", "biosample": "SAMN05560726", "wgs_master": "MDFH00000000.1", "refseq_category": "na", "taxid": "321846", "species_taxid": "321846", "organism_name": "Pseudomonas simiae", "infraspecific_name": "strain=CCUG 50988", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/18", "asm_name": "ASM173061v1", "asm_submitter": "Ottawa Research and Development Center", "gbrs_paired_asm": "GCA_001730615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/615/GCF_001730615.1_ASM173061v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6289502", "genome_size_ungapped": "6289502", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730615.1-RS_2024_07_24", "annotation_date": "2024-07-24", "total_gene_count": "5805", "protein_coding_gene_count": "5650", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-18", "dateModified": "2016-09-18", "datePublished": "2016-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas simiae" ], "sample_taxid": [ "321846" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.766 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6289502", "Number of Sequences": "34", "Longest Sequences (bp)": "652436", "N50 (bp)": "348579", "Gap Ratio (%)": "0.000064", "GCcontent (%)": "60.3", "Number of CDSs": "5706", "Average Protein Length": "326.4", "Coding Ratio (%)": "88.8", "Number of rRNAs": "16", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2077, "total_fragments": 2081, "ani_threshold": 95, 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