{ "type": "genome", "identifier": "GCF_001730685.1", "organism": "Caloranaerobacter ferrireducens", "title": "Caloranaerobacter ferrireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "329 lab", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001730685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05567320", "wgs_master": "MDJR00000000.1", "refseq_category": "reference genome", "taxid": "1323370", "species_taxid": "1323370", "organism_name": "Caloranaerobacter ferrireducens", "infraspecific_name": "strain=DY22619", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/18", "asm_name": "ASM173068v1", "asm_submitter": "329 lab", "gbrs_paired_asm": "GCA_001730685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/730/685/GCF_001730685.1_ASM173068v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2451939", "genome_size_ungapped": "2451939", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001730685.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "2480", "protein_coding_gene_count": "2420", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-18", "dateModified": "2016-09-18", "datePublished": "2016-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Caloranaerobacter ferrireducens" ], "sample_taxid": [ "1323370" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2451939", "Number of Sequences": "28", "Longest Sequences (bp)": "937574", "N50 (bp)": "308303", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.5", "Number of CDSs": "2434", "Average Protein Length": "294.0", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caloranaerobacter ferrireducens", "strain": "strain=DY22619", "accession": "GCA_001730685.1", "taxid": 1323370, "species_taxid": 1323370, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 803, "total_fragments": 804, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caloranaerobacter azorensis", "strain": "strain=DSM 13643", "accession": "GCA_900129995.1", "taxid": 116090, "species_taxid": 116090, "relation_to_type": "type", "validated": true, "ani": 86.9392, "matched_fragments": 549, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermohalobacter berrensis", "strain": "strain=CTT3", "accession": "GCA_003609645.1", "taxid": 99594, "species_taxid": 99594, "relation_to_type": "type", "validated": true, "ani": 76.7957, "matched_fragments": 178, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caldisalinibacter kiritimatiensis", "strain": "strain=L21-TH-D2", "accession": "GCA_000387765.1", "taxid": 1304284, "species_taxid": 1304284, "relation_to_type": "type", "validated": true, "ani": 76.6958, "matched_fragments": 148, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottschalkia purinilytica", "strain": "strain=DSM 1384", "accession": "GCA_001190785.1", "taxid": 1503, "species_taxid": 1503, "relation_to_type": "type", "validated": true, "ani": 75.9512, "matched_fragments": 98, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporanaerobacter acetigenes", "strain": "strain=DSM 13106", "accession": "GCA_900130025.1", "taxid": 165813, "species_taxid": 165813, "relation_to_type": "type", "validated": true, "ani": 75.9255, "matched_fragments": 76, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromonas gelatinilytica", "strain": "strain=D2Q-14", "accession": "GCA_016820635.1", "taxid": 2683194, "species_taxid": 2683194, "relation_to_type": "type", "validated": true, "ani": 75.9243, "matched_fragments": 102, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottschalkia acidurici", "strain": "strain=9a", "accession": "GCA_000299355.1", "taxid": 1556, "species_taxid": 1556, "relation_to_type": "type", "validated": true, "ani": 75.8781, "matched_fragments": 64, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Keratinibaculum paraultunense", "strain": "strain=DSM 26752", "accession": "GCA_004343355.1", "taxid": 1278232, "species_taxid": 1278232, "relation_to_type": "type", "validated": true, "ani": 75.8601, "matched_fragments": 55, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporosalibacterium faouarense", "strain": "strain=SOL3f37", "accession": "GCA_016765695.1", "taxid": 516123, "species_taxid": 516123, "relation_to_type": "type", "validated": true, "ani": 75.5045, "matched_fragments": 104, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella pigra", "strain": "strain=WCA3-693-APC-4", "accession": "GCA_009695605.1", "taxid": 2607614, "species_taxid": 2607614, "relation_to_type": "type", "validated": true, "ani": 75.4695, "matched_fragments": 66, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridiisalibacter paucivorans", "strain": "strain=DSM 22131", "accession": "GCA_000620125.1", "taxid": 408753, "species_taxid": 408753, "relation_to_type": "type", "validated": true, "ani": 75.4408, "matched_fragments": 78, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001730685.1", "gtdb_species": "s__Caloranaerobacter ferrireducens", "ani": 100.0, "matched_fragments": 803, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Thermohalobacteraceae;g__Caloranaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"min_intra_species_ani": "97.93", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003609645.1", "gtdb_species": "s__Thermohalobacter berrensis", "ani": 76.7957, "matched_fragments": 178, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Thermohalobacteraceae;g__Thermohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000387765.1", "gtdb_species": "s__Caldisalinibacter kiritimatiensis", "ani": 76.6958, "matched_fragments": 148, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Caldisalinibacteraceae;g__Caldisalinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"status": "-" }, { "accession": "GCF_016765695.1", "gtdb_species": "s__Sporosalibacterium faouarense", "ani": 75.5045, "matched_fragments": 104, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__VENL01;g__Sporosalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": -0.302, "doubling_h": -0.037, "growth_tmp": 60.0, "optimum_tmp": 62.5, "optimum_ph": null, "genome_size": 2436577.0, "gc_content": 29.73, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Caloranaerobacter", "ferrireducens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }