{ "type": "genome", "identifier": "GCF_001735805.1", "organism": "Streptomyces fodineus", "title": "Streptomyces fodineus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001735805.1", "bioproject": "PRJNA224116", "biosample": "SAMN05520841", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1904616", "species_taxid": "1904616", "organism_name": "Streptomyces fodineus", "infraspecific_name": "strain=TW1S1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/20", "asm_name": "ASM173580v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_001735805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/735/805/GCF_001735805.1_ASM173580v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9698948", "genome_size_ungapped": "9698948", "gc_percent": "71.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "8735", "protein_coding_gene_count": "8216", "non_coding_gene_count": "90", "pubmed_id": "30896386" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-20", "dateModified": "2016-09-20", "datePublished": "2016-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces fodineus" ], "sample_taxid": [ "1904616" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyewon-ri, Miwon-myeon, Sangdang-gu, Cheongju-si, Chungcheongbuk-do" ], "sample_host_location_id": [], "data_size": "2.599 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9698948", "Number of Sequences": "1", "Longest Sequences (bp)": "9698948", "N50 (bp)": "9698948", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "8867", "Average Protein Length": "319.1", "Coding Ratio (%)": "87.5", "Number of rRNAs": "18", "Number of tRNAs": "83", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces fodineus", "strain": "strain=TW1S1", "accession": "GCA_001735805.1", "taxid": 1904616, "species_taxid": 1904616, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": "GCA_001514055.1", "taxid": 1903, "species_taxid": 1903, "relation_to_type": "type", "validated": true, "ani": 87.9634, "matched_fragments": 1984, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 87.8874, "matched_fragments": 1931, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces achromogenes subsp. achromogenes", "strain": "strain=NRRL B-2120", "accession": "GCA_000720835.1", "taxid": 67256, "species_taxid": 67255, "relation_to_type": "type", "validated": true, "ani": 87.4129, "matched_fragments": 1769, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { 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