{ "type": "genome", "identifier": "GCF_001742425.1", "organism": "Bacillus solimangrovi", "title": "Bacillus solimangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001742425.1", "bioproject": "PRJNA224116", "biosample": "SAMN05526266", "wgs_master": "MJEH00000000.1", "refseq_category": "reference genome", "taxid": "1305675", "species_taxid": "1305675", "organism_name": "Bacillus solimangrovi", "infraspecific_name": "strain=GH2-4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/23", "asm_name": "ASM174242v1", "asm_submitter": "Korea Research Institute Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_001742425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/742/425/GCF_001742425.1_ASM174242v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3844017", "genome_size_ungapped": "3844007", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001742425.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3758", "protein_coding_gene_count": "3660", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-23", "dateModified": "2016-09-23", "datePublished": "2016-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus solimangrovi" ], "sample_taxid": [ "1305675" ], "sample_host_organism": [ "mangrove soil" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3844017", "Number of Sequences": "64", "Longest Sequences (bp)": "255211", "N50 (bp)": "104661", "Gap Ratio (%)": "0.000260", "GCcontent (%)": "35.2", "Number of CDSs": "3699", "Average Protein Length": "279.5", "Coding Ratio (%)": "80.7", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus solimangrovi", "strain": "strain=GH2-4", "accession": "GCA_001742425.1", "taxid": 1305675, "species_taxid": 1305675, 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76.5611, "matched_fragments": 67, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 76.56, "matched_fragments": 78, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus sedimentimangrovi", "strain": "strain=FJAT-2464", "accession": "GCA_010614825.1", "taxid": 2699460, "species_taxid": 2699460, "relation_to_type": "type", "validated": true, "ani": 76.5541, "matched_fragments": 52, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_900113355.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5526, "matched_fragments": 68, 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"below_threshold" }, { "organism_name": "Lottiidibacillus patelloidae", "strain": "strain=SA5d-4", "accession": "GCA_002262935.1", "taxid": 2670334, "species_taxid": 2670334, "relation_to_type": "type", "validated": true, "ani": 76.3882, "matched_fragments": 74, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus taeanensis", "strain": "strain=BH030017", "accession": "GCA_003318295.1", "taxid": 273032, "species_taxid": 273032, "relation_to_type": "type", "validated": true, "ani": 76.3684, "matched_fragments": 86, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus stercorigallinarum", "strain": "strain=Sa5YUA1", "accession": "GCA_014836495.1", "taxid": 2762240, "species_taxid": 2762240, "relation_to_type": "type", "validated": true, "ani": 76.3304, "matched_fragments": 68, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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