{ "type": "genome", "identifier": "GCF_001746755.1", "organism": "Magnetovibrio blakemorei", "title": "Magnetovibrio blakemorei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southwestern Oklahoma State University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001746755.1", "bioproject": "PRJNA224116", "biosample": "SAMN05467120", "wgs_master": "MCGG00000000.1", "refseq_category": "reference genome", "taxid": "28181", "species_taxid": "28181", "organism_name": "Magnetovibrio blakemorei", "infraspecific_name": "strain=MV-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/26", "asm_name": "ASM174675v1", "asm_submitter": "Southwestern Oklahoma State University", "gbrs_paired_asm": "GCA_001746755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/746/755/GCF_001746755.1_ASM174675v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3638804", "genome_size_ungapped": "3638804", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001746755.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3578", "protein_coding_gene_count": "3457", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-26", "dateModified": "2016-09-26", "datePublished": "2016-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Magnetovibrio blakemorei" ], "sample_taxid": [ "28181" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: salt marsh pool, Neponset River estuary, Boston, MA" ], "sample_host_location_id": [], "data_size": "1.033 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3638804", "Number of Sequences": "91", "Longest Sequences (bp)": "259372", "N50 (bp)": "95462", "Gap Ratio (%)": "0.000110", "GCcontent (%)": "54.3", "Number of CDSs": "3489", "Average Protein Length": "300.6", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetovibrio blakemorei", "strain": "strain=MV-1", "accession": "GCA_001746755.1", "taxid": 28181, "species_taxid": 28181, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1158, "total_fragments": 1163, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.7594, "matched_fragments": 60, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.3923, "matched_fragments": 85, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Varunaivibrio sulfuroxidans", "strain": "strain=DSM 101688", "accession": "GCA_004341725.1", "taxid": 1773489, "species_taxid": 1773489, "relation_to_type": "type", "validated": true, "ani": 76.3438, "matched_fragments": 93, 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