{
    "type": "genome",
    "identifier": "GCF_001746855.1",
    "organism": "Pauljensenia hongkongensis",
    "title": "Pauljensenia hongkongensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "HebeiProvincialInstitute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001746855.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05786934",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "178339",
        "species_taxid": "178339",
        "organism_name": "Pauljensenia hongkongensis",
        "infraspecific_name": "strain=HKU8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/26",
        "asm_name": "ASM174685v1",
        "asm_submitter": "HebeiProvincialInstitute",
        "gbrs_paired_asm": "GCA_001746855.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/746/855/GCF_001746855.1_ASM174685v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2141493",
        "genome_size_ungapped": "2080245",
        "gc_percent": "70.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001746855.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "1852",
        "protein_coding_gene_count": "1730",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-26",
    "dateModified": "2016-09-26",
    "datePublished": "2016-09-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pauljensenia hongkongensis"
        ],
        "sample_taxid": [
            "178339"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Shijiazhuang"
        ],
        "sample_host_location_id": [],
        "data_size": "0.563 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2141493",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2141493",
        "N50 (bp)": "2141493",
        "Gap Ratio (%)": "2.860061",
        "GCcontent (%)": "70.4",
        "Number of CDSs": "1740",
        "Average Protein Length": "337.6",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Schaalia meyeri",
                "strain": "strain=FDAARGOS_985",
                "accession": "GCA_016127995.1",
                "taxid": 52773,
                "species_taxid": 52773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.423,
                "matched_fragments": 283,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaalia meyeri",
                "strain": "strain=DSM 20733",
                "accession": "GCA_900105015.1",
                "taxid": 52773,
                "species_taxid": 52773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3528,
                "matched_fragments": 275,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaalia hyovaginalis",
                "strain": "strain=DSM 10695",
                "accession": "GCA_014208035.1",
                "taxid": 29316,
                "species_taxid": 29316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4758,
                "matched_fragments": 260,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces polynesiensis",
                "strain": "strain=MS2",
                "accession": "GCA_000820725.1",
                "taxid": 1325934,
                "species_taxid": 1325934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.272,
                "matched_fragments": 212,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces provencensis",
                "strain": "strain=SN12",
                "accession": "GCA_900155435.1",
                "taxid": 1720198,
                "species_taxid": 1720198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0739,
                "matched_fragments": 232,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces oris",
                "strain": "strain=FDAARGOS_1051",
                "accession": "GCA_016127955.1",
                "taxid": 544580,
                "species_taxid": 544580,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9483,
                "matched_fragments": 182,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces dentalis",
                "strain": "strain=DSM 19115",
                "accession": "GCA_000429225.1",
                "taxid": 272548,
                "species_taxid": 272548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2146,
                "matched_fragments": 229,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces radicidentis",
                "strain": "strain=CCUG 36733",
                "accession": "GCA_001553565.1",
                "taxid": 111015,
                "species_taxid": 111015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1347,
                "matched_fragments": 228,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces ruminicola",
                "strain": "strain=DSM 27982",
                "accession": "GCA_900103885.1",
                "taxid": 332524,
                "species_taxid": 332524,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9464,
                "matched_fragments": 169,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces urogenitalis",
                "strain": "strain=DSM 15434",
                "accession": "GCA_000159035.1",
                "taxid": 103621,
                "species_taxid": 103621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9404,
                "matched_fragments": 154,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4181,
                "matched_fragments": 177,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia soli",
                "strain": "strain=DSM 21838",
                "accession": "GCA_002563695.1",
                "taxid": 638953,
                "species_taxid": 638953,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3703,
                "matched_fragments": 177,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7801,
                "matched_fragments": 151,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus bolidensis",
                "strain": "strain=DSM 15745",
                "accession": "GCA_000426385.1",
                "taxid": 229480,
                "species_taxid": 229480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6892,
                "matched_fragments": 134,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium senegalense",
                "strain": "strain=Marseille-P4329",
                "accession": "GCA_900411315.1",
                "taxid": 2080750,
                "species_taxid": 2080750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.55,
                "matched_fragments": 99,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5065,
                "matched_fragments": 161,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
                "species_taxid": 2835530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3585,
                "matched_fragments": 151,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_002240635.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1847,
                "matched_fragments": 149,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001746855.1",
                "gtdb_species": "s__Pauljensenia hongkongensis",
                "ani": 99.9996,
                "matched_fragments": 711,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000429245.1",
                "gtdb_species": "s__Pauljensenia georgiae",
                "ani": 93.8647,
                "matched_fragments": 599,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000185285.1",
                "gtdb_species": "s__Pauljensenia sp000185285",
                "ani": 81.1653,
                "matched_fragments": 335,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_001072465.1",
                "gtdb_species": "s__Pauljensenia sp001072465",
                "ani": 81.121,
                "matched_fragments": 315,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001064145.1",
                "gtdb_species": "s__Pauljensenia sp001064145",
                "ani": 81.0041,
                "matched_fragments": 304,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018382595.1",
                "gtdb_species": "s__Pauljensenia sp018382595",
                "ani": 80.9846,
                "matched_fragments": 282,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000466265.1",
                "gtdb_species": "s__Pauljensenia sp000466265",
                "ani": 80.8758,
                "matched_fragments": 319,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005696695.1",
                "gtdb_species": "s__Pauljensenia odontolytica_C",
                "ani": 80.8523,
                "matched_fragments": 331,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000411415.1",
                "gtdb_species": "s__Pauljensenia sp000411415",
                "ani": 80.718,
                "matched_fragments": 308,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902373545.1",
                "gtdb_species": "s__Pauljensenia sp902373545",
                "ani": 80.5327,
                "matched_fragments": 278,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900499005.1",
                "gtdb_species": "s__Pauljensenia culturomici",
                "ani": 79.952,
                "matched_fragments": 305,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014208035.1",
                "gtdb_species": "s__Pauljensenia hyovaginalis",
                "ani": 79.4308,
                "matched_fragments": 263,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.48",
                "min_intra_species_ani": "95.48",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pauljensenia",
        "hongkongensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}