{ "type": "genome", "identifier": "GCF_001747085.1", "organism": "Flavivirga aquatica", "title": "Flavivirga aquatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001747085.1", "bioproject": "PRJNA224116", "biosample": "SAMN05001254", "wgs_master": "MDJD00000000.1", "refseq_category": "reference genome", "taxid": "1849968", "species_taxid": "1849968", "organism_name": "Flavivirga aquatica", "infraspecific_name": "strain=SK-16", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/28", "asm_name": "ASM174708v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_001747085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/747/085/GCF_001747085.1_ASM174708v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4640370", "genome_size_ungapped": "4640370", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001747085.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "4015", "protein_coding_gene_count": "3866", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-28", "dateModified": "2016-09-28", "datePublished": "2016-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavivirga aquatica" ], "sample_taxid": [ "1849968" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Aburatsubo Inlet, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 79.2487, "matched_fragments": 533, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.8982, "matched_fragments": 502, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 78.8901, "matched_fragments": 481, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.8545, "matched_fragments": 507, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.8507, "matched_fragments": 508, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 78.8468, "matched_fragments": 478, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 78.8014, "matched_fragments": 411, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 78.7866, "matched_fragments": 566, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.7778, "matched_fragments": 351, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga eckloniae", "strain": "strain=ECD14", "accession": "GCA_002886045.1", "taxid": 1803846, "species_taxid": 1803846, "relation_to_type": "type", "validated": true, "ani": 78.6913, "matched_fragments": 532, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 78.6833, "matched_fragments": 358, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.6563, "matched_fragments": 470, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 78.632, "matched_fragments": 470, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 78.3692, "matched_fragments": 453, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Changchengzhania lutea", "strain": "strain=SM1355", "accession": "GCA_006974145.1", "taxid": 2049305, "species_taxid": 2049305, "relation_to_type": "type", "validated": true, "ani": 78.3345, "matched_fragments": 360, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana marina", "strain": "strain=JLT21", "accession": "GCA_011762485.1", "taxid": 1565536, "species_taxid": 1565536, "relation_to_type": "type", "validated": true, "ani": 77.9432, "matched_fragments": 370, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.6868, "matched_fragments": 250, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 77.4984, "matched_fragments": 271, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001747085.1", "gtdb_species": "s__Algibacter_C aquaticus", "ani": 100.0, "matched_fragments": 1530, "total_fragments": 1532, "gtdb_taxonomy": 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