{ "type": "genome", "identifier": "GCF_001747405.1", "organism": "Chlorobaculum limnaeum", "title": "Chlorobaculum limnaeum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pennsylvania State University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001747405.1", "bioproject": "PRJNA224116", "biosample": "SAMN05793943", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "274537", "species_taxid": "274537", "organism_name": "Chlorobaculum limnaeum", "infraspecific_name": "strain=DSM 1677", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/09/28", "asm_name": "ASM174740v1", "asm_submitter": "Pennsylvania State University", "gbrs_paired_asm": "GCA_001747405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/747/405/GCF_001747405.1_ASM174740v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2797276", "genome_size_ungapped": "2797276", "gc_percent": "56.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "2625", "protein_coding_gene_count": "2550", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-09-28", "dateModified": "2016-09-28", "datePublished": "2016-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chlorobaculum limnaeum" ], "sample_taxid": [ "274537" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: University Park" ], "sample_host_location_id": [], "data_size": "0.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2797276", "Number of Sequences": "1", "Longest Sequences (bp)": "2797276", "N50 (bp)": "2797276", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "2542", "Average Protein Length": "313.5", "Coding Ratio (%)": "85.5", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 931, "total_fragments": 932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 89.6727, "matched_fragments": 735, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum tepidum", "strain": "strain=TLS", "accession": "GCA_000006985.1", "taxid": 1097, "species_taxid": 1097, "relation_to_type": "type", "validated": true, "ani": 85.8372, "matched_fragments": 618, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 77.9153, "matched_fragments": 214, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecochloris aestuarii", "strain": "strain=DSM 271", "accession": "GCA_000020625.1", "taxid": 1102, "species_taxid": 1102, "relation_to_type": "type", "validated": true, "ani": 77.5854, "matched_fragments": 67, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.4121, "matched_fragments": 152, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.2879, "matched_fragments": 52, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": 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