{
    "type": "genome",
    "identifier": "GCF_001748345.1",
    "organism": "Alcaligenes faecalis subsp. faecalis NBRC 13111",
    "title": "Alcaligenes faecalis subsp. faecalis NBRC 13111",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Institute of Green Science and Technology, Shizuoka University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001748345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00058712",
        "wgs_master": "BDHG00000000.1",
        "refseq_category": "na",
        "taxid": "1218102",
        "species_taxid": "511",
        "organism_name": "Alcaligenes faecalis subsp. faecalis NBRC 13111",
        "infraspecific_name": "strain=NBRC 13111",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/01",
        "asm_name": "Afaecalis_assembly01",
        "asm_submitter": "Research Institute of Green Science and Technology, Shizuoka University",
        "gbrs_paired_asm": "GCA_001748345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/748/345/GCF_001748345.1_Afaecalis_assembly01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4042912",
        "genome_size_ungapped": "4042912",
        "gc_percent": "56.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001748345.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "3752",
        "protein_coding_gene_count": "3675",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-01",
    "dateModified": "2016-09-01",
    "datePublished": "2016-09-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenes faecalis subsp. faecalis NBRC 13111"
        ],
        "sample_taxid": [
            "1218102"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.145 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4042912",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "956170",
        "N50 (bp)": "413836",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "3728",
        "Average Protein Length": "320.7",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alcaligenes faecalis subsp. faecalis",
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                "relation_to_type": "type",
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            },
            {
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            {
                "organism_name": "Alcaligenes faecalis",
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes ammonioxydans",
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                "species_taxid": 2582914,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes pakistanensis",
                "strain": "strain=KCTC 42083",
                "accession": "GCA_014652815.1",
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                "species_taxid": 1482717,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pusillimonas faecipullorum",
                "strain": "strain=CC-YST705",
                "accession": "GCA_020539505.1",
                "taxid": 2755040,
                "species_taxid": 2755040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2062,
                "matched_fragments": 130,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
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                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Bordetella bronchiseptica",
                "strain": "strain=CCUG 219",
                "accession": "GCA_021391275.1",
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                "species_taxid": 518,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans radicicola",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
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            }
        ],
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        "gtdb_result": [
            {
                "accession": "GCF_002443155.1",
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                "total_fragments": 1336,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.222,
        "cell_length": -0.125,
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        "rRNA16S_genes": 3.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Alcaligenes",
        "faecalis",
        "subsp.",
        "faecalis",
        "NBRC",
        "13111"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}