{ "type": "genome", "identifier": "GCF_001753165.1", "organism": "Acidihalobacter aeolianus", "title": "Acidihalobacter aeolianus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Curtin University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001753165.1", "bioproject": "PRJNA224116", "biosample": "SAMN05853496", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2792603", "species_taxid": "2792603", "organism_name": "Acidihalobacter aeolianus", "infraspecific_name": "strain=V6", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/06", "asm_name": "ASM175316v1", "asm_submitter": "Curtin University", "gbrs_paired_asm": "GCA_001753165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/753/165/GCF_001753165.1_ASM175316v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3526118", "genome_size_ungapped": "3520105", "gc_percent": "62.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001753165.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3420", "protein_coding_gene_count": "3309", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-06", "dateModified": "2016-10-06", "datePublished": "2016-10-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidihalobacter aeolianus" ], "sample_taxid": [ "2792603" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Aeolian Islands, Vulcano" ], "sample_host_location_id": [], "data_size": "0.987 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3526118", "Number of Sequences": "2", "Longest Sequences (bp)": "3363634", "N50 (bp)": "3363634", "Gap Ratio (%)": "0.170527", "GCcontent (%)": "61.9", "Number of CDSs": "3386", "Average Protein Length": "308.5", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidihalobacter aeolianus", "strain": "strain=V6", "accession": "GCA_001753165.1", "taxid": 2792603, "species_taxid": 2792603, "relation_to_type": "type", "validated": true, "ani": 99.9991, "matched_fragments": 1173, "total_fragments": 1175, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidihalobacter prosperus", "strain": "strain=DSM 5130", "accession": "GCA_000754095.2", "taxid": 160660, "species_taxid": 160660, "relation_to_type": "type", "validated": true, "ani": 85.6645, "matched_fragments": 687, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter yilgarnensis", "strain": "strain=F5", "accession": "GCA_001753245.1", "taxid": 2819280, "species_taxid": 2819280, "relation_to_type": "type", "validated": true, "ani": 80.2776, "matched_fragments": 516, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter ferrooxydans", "strain": "strain=V8", "accession": "GCA_001975725.1", "taxid": 1765967, "species_taxid": 1765967, "relation_to_type": "type", "validated": true, "ani": 79.1313, "matched_fragments": 296, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { 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tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 77.3435, "matched_fragments": 127, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 77.3416, "matched_fragments": 136, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 77.3327, "matched_fragments": 160, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ectothiorhodospira magna", "strain": "strain=B7-7", "accession": "GCA_900110965.1", "taxid": 867345, "species_taxid": 867345, "relation_to_type": "type", "validated": true, "ani": 77.2195, "matched_fragments": 92, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio halophilus", "strain": "strain=HL17", "accession": "GCA_001995255.1", "taxid": 252474, "species_taxid": 252474, "relation_to_type": "type", "validated": true, "ani": 77.074, "matched_fragments": 133, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 77.0663, "matched_fragments": 142, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, 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"validated": true, "ani": 76.6035, "matched_fragments": 119, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermithiobacillus tepidarius", "strain": "strain=DSM 3134", "accession": "GCA_000423825.1", "taxid": 929, "species_taxid": 929, "relation_to_type": "type", "validated": true, "ani": 76.4752, "matched_fragments": 131, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 76.4578, "matched_fragments": 90, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas nematodicola", "strain": "strain=CPCC 101271", "accession": "GCA_009467805.1", "taxid": 2656746, "species_taxid": 2656746, "relation_to_type": "type", "validated": true, "ani": 76.2402, 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