{ "type": "genome", "identifier": "GCF_001757355.1", "organism": "Sphingobium phenoxybenzoativorans", "title": "Sphingobium phenoxybenzoativorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001757355.1", "bioproject": "PRJNA224116", "biosample": "SAMN05756205", "wgs_master": "MINO00000000.1", "refseq_category": "na", "taxid": "1592790", "species_taxid": "1592790", "organism_name": "Sphingobium phenoxybenzoativorans", "infraspecific_name": "strain=SC_3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/11", "asm_name": "ASM175735v1", "asm_submitter": "Jiangsu Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_001757355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/757/355/GCF_001757355.1_ASM175735v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5039171", "genome_size_ungapped": "5039171", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "202", "contig_count": "202", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001757355.1-RS_2024_07_09", "annotation_date": "2024-07-09", "total_gene_count": "5100", "protein_coding_gene_count": "4925", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-11", "dateModified": "2016-10-11", "datePublished": "2016-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobium phenoxybenzoativorans" ], "sample_taxid": [ "1592790" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiangsu" ], "sample_host_location_id": [], "data_size": "1.414 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5039171", "Number of Sequences": "202", "Longest Sequences (bp)": "302899", "N50 (bp)": "61297", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4778", "Average Protein Length": "293.7", "Coding Ratio (%)": "83.5", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobium phenoxybenzoativorans", "strain": "strain=SC_3", "accession": "GCA_001757355.1", "taxid": 1592790, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium wenxiniae", "strain": "strain=JZ-1", "accession": "GCA_014205735.1", "taxid": 595605, "species_taxid": 595605, "relation_to_type": "type", "validated": true, "ani": 80.9814, "matched_fragments": 495, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 80.9034, "matched_fragments": 558, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium wenxiniae", "strain": "strain=CGMCC 1.7748", "accession": "GCA_007830065.1", "taxid": 595605, "species_taxid": 595605, "relation_to_type": "type", "validated": true, "ani": 80.8873, "matched_fragments": 511, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 80.871, "matched_fragments": 565, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium scionense", "strain": "strain=DSM 19371", "accession": "GCA_014197035.1", "taxid": 1404341, "species_taxid": 1404341, "relation_to_type": "type", "validated": true, "ani": 80.65, "matched_fragments": 607, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 80.6402, "matched_fragments": 519, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 80.6391, "matched_fragments": 553, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium limneticum", "strain": "strain=DSM 25076", "accession": "GCA_008710155.1", "taxid": 1007511, "species_taxid": 1007511, "relation_to_type": "type", "validated": true, "ani": 80.539, "matched_fragments": 558, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium bisphenolivorans", "strain": "strain=YL23", "accession": "GCA_000412635.1", "taxid": 1335760, "species_taxid": 1335760, "relation_to_type": "type", "validated": true, "ani": 80.0947, "matched_fragments": 463, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 80.0367, "matched_fragments": 527, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium sufflavum", "strain": "strain=HL-25", "accession": "GCA_021403115.1", "taxid": 1129547, "species_taxid": 1129547, "relation_to_type": "type", "validated": true, "ani": 79.2172, "matched_fragments": 409, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium xanthum", "strain": "strain=NL9", "accession": "GCA_019737615.1", "taxid": 1387165, "species_taxid": 1387165, "relation_to_type": "type", "validated": true, "ani": 79.0497, "matched_fragments": 360, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", 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