{ "type": "genome", "identifier": "GCF_001787335.1", "organism": "Kozakia baliensis", "title": "Kozakia baliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001787335.1", "bioproject": "PRJNA224116", "biosample": "SAMN04396914", "wgs_master": "na", "refseq_category": "na", "taxid": "153496", "species_taxid": "153496", "organism_name": "Kozakia baliensis", "infraspecific_name": "strain=DSM 14400", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/19", "asm_name": "ASM178733v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_001787335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/787/335/GCF_001787335.1_ASM178733v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3505604", "genome_size_ungapped": "3505604", "gc_percent": "57.500000", "replicon_count": "7", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001787335.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3412", "protein_coding_gene_count": "3197", "non_coding_gene_count": "76", "pubmed_id": "27716345" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-19", "dateModified": "2016-10-19", "datePublished": "2016-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Kozakia baliensis" ], "sample_taxid": [ "153496" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indonesia: Bali" ], "sample_host_location_id": [], "data_size": "0.989 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3505604", "Number of Sequences": "7", "Longest Sequences (bp)": "2888029", "N50 (bp)": "2888029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.4", "Number of CDSs": "3374", "Average Protein Length": "306.7", "Coding Ratio (%)": "88.6", "Number of rRNAs": "15", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kozakia baliensis", "strain": "strain=DSM 14400", "accession": "GCA_001787335.1", "taxid": 153496, "species_taxid": 153496, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1161, "total_fragments": 1165, "ani_threshold": 95, 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"matched_fragments": 224, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.9441, "matched_fragments": 173, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.9387, "matched_fragments": 229, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neokomagataea anthophila", "strain": "strain=TBRC 2177", "accession": "GCA_018122595.1", "taxid": 2826925, "species_taxid": 2826925, "relation_to_type": "type", "validated": true, "ani": 77.2251, "matched_fragments": 74, "total_fragments": 1165, 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