{ "type": "genome", "identifier": "GCF_001831475.1", "organism": "Flavobacterium crassostreae", "title": "Flavobacterium crassostreae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001831475.1", "bioproject": "PRJNA224116", "biosample": "SAMN05695074", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1763534", "species_taxid": "1763534", "organism_name": "Flavobacterium crassostreae", "infraspecific_name": "strain=LPB0076", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/24", "asm_name": "ASM183147v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001831475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/831/475/GCF_001831475.1_ASM183147v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3027315", "genome_size_ungapped": "3027315", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001831475.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "2706", "protein_coding_gene_count": "2607", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-24", "dateModified": "2016-10-24", "datePublished": "2016-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium crassostreae" ], "sample_taxid": [ "1763534" ], "sample_host_organism": [ "Magallana gigas" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Incheon" ], "sample_host_location_id": [], "data_size": "0.830 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3027315", "Number of Sequences": "1", "Longest Sequences (bp)": "3027315", "N50 (bp)": "3027315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.0", "Number of CDSs": "2620", "Average Protein Length": "330.3", "Coding Ratio (%)": "85.8", "Number of rRNAs": "21", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium crassostreae", "strain": "strain=LPB0076", "accession": "GCA_001831475.1", "taxid": 1763534, "species_taxid": 1763534, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1007, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium crassostreae", "strain": "strain=LPB0076", "accession": "GCA_001686945.1", "taxid": 1763534, "species_taxid": 1763534, "relation_to_type": "type", "validated": true, "ani": 99.9698, "matched_fragments": 879, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 79.9814, "matched_fragments": 416, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 79.5615, "matched_fragments": 391, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 78.8834, "matched_fragments": 260, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 78.6637, "matched_fragments": 290, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 78.5321, "matched_fragments": 285, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 78.5273, "matched_fragments": 286, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium restrictum", "strain": "strain=LB1R34", "accession": "GCA_007097245.1", "taxid": 2594428, "species_taxid": 2594428, "relation_to_type": "type", "validated": true, "ani": 78.4837, "matched_fragments": 313, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 78.48, "matched_fragments": 315, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.3361, "matched_fragments": 284, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.2228, "matched_fragments": 246, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 77.9593, "matched_fragments": 249, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 19978", "accession": "GCA_900129545.1", "taxid": 468056, "species_taxid": 468056, "relation_to_type": "type", "validated": true, "ani": 77.9476, "matched_fragments": 251, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 77.9356, "matched_fragments": 251, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.9336, "matched_fragments": 238, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 77.9239, "matched_fragments": 250, 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