{ "type": "genome", "identifier": "GCF_001857965.1", "organism": "Flavobacterium commune", "title": "Flavobacterium commune", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001857965.1", "bioproject": "PRJNA224116", "biosample": "SAMN05804760", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1306519", "species_taxid": "1306519", "organism_name": "Flavobacterium commune", "infraspecific_name": "strain=PK15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "ASM185796v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_001857965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/857/965/GCF_001857965.1_ASM185796v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3851214", "genome_size_ungapped": "3851214", "gc_percent": "34.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001857965.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3229", "protein_coding_gene_count": "3143", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium commune" ], "sample_taxid": [ "1306519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3851214", "Number of Sequences": "1", "Longest Sequences (bp)": "3851214", "N50 (bp)": "3851214", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "3157", "Average Protein Length": "359.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "15", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1277, "total_fragments": 1283, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 88.0087, "matched_fragments": 971, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 86.6971, "matched_fragments": 902, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 86.6524, "matched_fragments": 1044, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 84.3887, "matched_fragments": 893, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 84.3739, "matched_fragments": 866, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=DSM 1076", "accession": "GCA_900142775.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 84.2335, "matched_fragments": 922, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_001686935.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 84.0335, "matched_fragments": 925, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 83.9528, "matched_fragments": 922, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_007989005.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 83.8936, "matched_fragments": 939, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 79.1546, "matched_fragments": 456, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 79.0827, "matched_fragments": 424, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.8678, "matched_fragments": 461, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.7676, "matched_fragments": 438, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.6057, "matched_fragments": 167, "total_fragments": 1283, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001857965.1", "gtdb_species": "s__Flavobacterium commune", "ani": 100.0, "matched_fragments": 1279, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004016525.1", "gtdb_species": "s__Flavobacterium sufflavum", "ani": 88.034, "matched_fragments": 969, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009909155.2", "gtdb_species": "s__Flavobacterium undicola", "ani": 86.6883, "matched_fragments": 903, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"-" }, { "accession": "GCF_000695795.1", "gtdb_species": "s__Flavobacterium seoulense", "ani": 84.3653, "matched_fragments": 867, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142775.1", "gtdb_species": "s__Flavobacterium flevense", "ani": 84.2261, "matched_fragments": 922, "total_fragments": 1283, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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