{ "type": "genome", "identifier": "GCF_001866005.1", "organism": "Anaerobacillus alkalilacustris", "title": "Anaerobacillus alkalilacustris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Manchester", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001866005.1", "bioproject": "PRJNA224116", "biosample": "SAMN05916140", "wgs_master": "MLQR00000000.1", "refseq_category": "reference genome", "taxid": "393763", "species_taxid": "393763", "organism_name": "Anaerobacillus alkalilacustris", "infraspecific_name": "strain=DSM 18345", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/03", "asm_name": "ASM186600v1", "asm_submitter": "University of Manchester", "gbrs_paired_asm": "GCA_001866005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/866/005/GCF_001866005.1_ASM186600v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4047432", "genome_size_ungapped": "4047432", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001866005.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3922", "protein_coding_gene_count": "3650", "non_coding_gene_count": "184", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-03", "dateModified": "2016-11-03", "datePublished": "2016-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerobacillus alkalilacustris" ], "sample_taxid": [ "393763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Lake Khadyn, Tuva Upper Yenisey Region" ], "sample_host_location_id": [], "data_size": "1.132 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4047432", "Number of Sequences": "50", "Longest Sequences (bp)": "818671", "N50 (bp)": "262426", "Gap Ratio (%)": "0.001853", "GCcontent (%)": "35.0", "Number of CDSs": "3765", "Average Protein Length": "283.6", "Coding Ratio (%)": "79.1", "Number of rRNAs": "20", "Number of tRNAs": "147", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerobacillus alkalilacustris", "strain": "strain=DSM 18345", "accession": "GCA_001866005.1", "taxid": 393763, "species_taxid": 393763, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1317, "total_fragments": 1322, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Anaerobacillus alkalidiazotrophicus", "strain": "strain=DSM 22531", "accession": "GCA_001866055.1", "taxid": 472963, "species_taxid": 472963, "relation_to_type": "type", "validated": true, "ani": 94.1866, "matched_fragments": 947, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus isosaccharinicus", "strain": "strain=NB2006", "accession": "GCA_001866075.3", "taxid": 1532552, "species_taxid": 1532552, "relation_to_type": "type", "validated": true, "ani": 79.1698, "matched_fragments": 360, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 78.7079, "matched_fragments": 88, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus arseniciselenatis", "strain": "strain=DSM 15340", "accession": "GCA_001865995.1", "taxid": 85682, "species_taxid": 85682, "relation_to_type": "type", "validated": true, "ani": 78.6958, "matched_fragments": 316, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus alkaliphilus", "strain": "strain=B16-10", "accession": "GCA_004116265.1", "taxid": 1548597, "species_taxid": 1548597, "relation_to_type": "type", "validated": true, "ani": 78.4207, "matched_fragments": 293, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus shivajii", "strain": "strain=JCM 32183", "accession": "GCA_020519665.1", "taxid": 1983719, "species_taxid": 1983719, "relation_to_type": "type", "validated": true, "ani": 78.202, "matched_fragments": 85, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella cohnii", "strain": "strain=DSM 6307", "accession": "GCA_002250055.1", "taxid": 33932, "species_taxid": 33932, "relation_to_type": "type", "validated": true, "ani": 78.0064, "matched_fragments": 80, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertibacillus haloalkaliphilus", "strain": "strain=KJ1-10-99", "accession": "GCA_019039105.1", "taxid": 1328930, "species_taxid": 1328930, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 94, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 77.2018, "matched_fragments": 69, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 77.1378, "matched_fragments": 77, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 76.8714, "matched_fragments": 61, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacterium elongatum", "strain": "strain=MEB199", "accession": "GCA_019024285.1", "taxid": 2675466, "species_taxid": 2675466, "relation_to_type": "type", "validated": true, "ani": 76.7293, "matched_fragments": 112, "total_fragments": 1322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalophilus marmarensis", "strain": "strain=DSM 21297", 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