{ "type": "genome", "identifier": "GCF_001870415.1", "organism": "Pseudomonas azotoformans", "title": "Pseudomonas azotoformans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ottawa Research and Development Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001870415.1", "bioproject": "PRJNA224116", "biosample": "SAMN05559686", "wgs_master": "MDDQ00000000.1", "refseq_category": "na", "taxid": "47878", "species_taxid": "47878", "organism_name": "Pseudomonas azotoformans", "infraspecific_name": "strain=LMG 21611", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/07", "asm_name": "ASM187041v1", "asm_submitter": "Ottawa Research and Development Center", "gbrs_paired_asm": "GCA_001870415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/870/415/GCF_001870415.1_ASM187041v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6719060", "genome_size_ungapped": "6719060", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001870415.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "6118", "protein_coding_gene_count": "5955", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-07", "dateModified": "2016-11-07", "datePublished": "2016-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas azotoformans" ], "sample_taxid": [ "47878" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.878 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6719060", "Number of Sequences": "36", "Longest Sequences (bp)": "681308", "N50 (bp)": "385011", "Gap Ratio (%)": "0.000060", "GCcontent (%)": "61.0", "Number of CDSs": "5987", "Average Protein Length": "334.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "15", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas azotoformans", "strain": "strain=LMG 21611", "accession": "GCA_001870415.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2220, 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"status": "conclusive" }, { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9906, "matched_fragments": 2197, "total_fragments": 2223, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 91.1087, "matched_fragments": 1852, "total_fragments": 2223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 90.4135, "matched_fragments": 1767, "total_fragments": 2223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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