{
    "type": "genome",
    "identifier": "GCF_001875655.1",
    "organism": "Enterobacter hormaechei ATCC 49162",
    "title": "Enterobacter hormaechei ATCC 49162",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang Sci-Tech University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001875655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05787340",
        "wgs_master": "MKEQ00000000.1",
        "refseq_category": "na",
        "taxid": "888063",
        "species_taxid": "158836",
        "organism_name": "Enterobacter hormaechei ATCC 49162",
        "infraspecific_name": "strain=ATCC 49162",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/10",
        "asm_name": "ASM187565v1",
        "asm_submitter": "Zhejiang Sci-Tech University",
        "gbrs_paired_asm": "GCA_001875655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/875/655/GCF_001875655.1_ASM187565v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4890213",
        "genome_size_ungapped": "4883895",
        "gc_percent": "55.000000",
        "replicon_count": "1",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001875655.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "4750",
        "protein_coding_gene_count": "4553",
        "non_coding_gene_count": "125",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-10",
    "dateModified": "2016-11-10",
    "datePublished": "2016-11-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Enterobacter hormaechei ATCC 49162"
        ],
        "sample_taxid": [
            "888063"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.383 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4890213",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3831920",
        "N50 (bp)": "3831920",
        "Gap Ratio (%)": "0.129197",
        "GCcontent (%)": "55.2",
        "Number of CDSs": "4618",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "26",
        "Number of tRNAs": "94",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Enterobacter hormaechei subsp. hormaechei",
                "strain": "strain=ATCC 49162",
                "accession": "GCA_001875655.1",
                "taxid": 301105,
                "species_taxid": 158836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1628,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9898,
                "matched_fragments": 1619,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterobacter hormaechei subsp. hormaechei",
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                "accession": "GCA_000213995.1",
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                "ani": 99.9511,
                "matched_fragments": 1599,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterobacter hormaechei subsp. oharae",
                "strain": "strain=FDAARGOS_1533",
                "accession": "GCA_020097195.1",
                "taxid": 301102,
                "species_taxid": 158836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1643,
                "matched_fragments": 1396,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterobacter hormaechei subsp. oharae",
                "strain": "strain=DSM 16687",
                "accession": "GCA_001729705.1",
                "taxid": 301102,
                "species_taxid": 158836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1185,
                "matched_fragments": 1405,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enterobacter hormaechei subsp. steigerwaltii",
                "strain": "strain=DSM 16691",
                "accession": "GCA_001729725.1",
                "taxid": 299766,
                "species_taxid": 158836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9967,
                "matched_fragments": 1405,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei subsp. xiangfangensis",
                "strain": "strain=LMG27195",
                "accession": "GCA_001729785.1",
                "taxid": 1296536,
                "species_taxid": 158836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8559,
                "matched_fragments": 1398,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
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                "ani": 88.3945,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2416,
                "matched_fragments": 1281,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter cloacae",
                "strain": "strain=DSM 30054",
                "accession": "GCA_021469225.1",
                "taxid": 550,
                "species_taxid": 550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5982,
                "matched_fragments": 1284,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5322,
                "matched_fragments": 1222,
                "total_fragments": 1628,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001875655.1",
                "gtdb_species": "s__Enterobacter hormaechei",
                "ani": 100.0,
                "matched_fragments": 1628,
                "total_fragments": 1628,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_011078175.1",
                "gtdb_species": "s__Enterobacter cloacae_Q",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCF_001729745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter",
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            },
            {
                "accession": "GCF_900322725.1",
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            },
            {
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            },
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        ]
    },
    "_bac2feature": {
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        "coding_genes": 4759.312,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Enterobacter",
        "hormaechei",
        "ATCC",
        "49162"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}