{
    "type": "genome",
    "identifier": "GCF_001878855.1",
    "organism": "Poseidonibacter lekithochrous",
    "title": "Poseidonibacter lekithochrous",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad de Santiago de Compostela",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001878855.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04555171",
        "wgs_master": "MKCO00000000.1",
        "refseq_category": "na",
        "taxid": "1904463",
        "species_taxid": "1904463",
        "organism_name": "Poseidonibacter lekithochrous",
        "infraspecific_name": "strain=LFT 1.7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/14",
        "asm_name": "ASM187885v1",
        "asm_submitter": "Universidad de Santiago de Compostela",
        "gbrs_paired_asm": "GCA_001878855.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/878/855/GCF_001878855.1_ASM187885v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3607848",
        "genome_size_ungapped": "3607848",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "436",
        "contig_count": "436",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001878855.1-RS_2024_08_01",
        "annotation_date": "2024-08-01",
        "total_gene_count": "3722",
        "protein_coding_gene_count": "3578",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-14",
    "dateModified": "2016-11-14",
    "datePublished": "2016-11-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Poseidonibacter lekithochrous"
        ],
        "sample_taxid": [
            "1904463"
        ],
        "sample_host_organism": [
            "scallop larvae"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway: Bergen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.982 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3607848",
        "Number of Sequences": "436",
        "Longest Sequences (bp)": "1211507",
        "N50 (bp)": "343594",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.6",
        "Number of CDSs": "3327",
        "Average Protein Length": "323.3",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "4",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Poseidonibacter lekithochrous",
                "strain": "strain=LFT 1.7",
                "accession": "GCA_001878855.1",
                "taxid": 1904463,
                "species_taxid": 1904463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1148,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Poseidonibacter lekithochrous",
                "strain": "strain=DSM 100870",
                "accession": "GCA_013283835.1",
                "taxid": 1904463,
                "species_taxid": 1904463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9942,
                "matched_fragments": 1148,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Malaciobacter pacificus",
                "strain": "strain=LMG 26638",
                "accession": "GCA_004214795.1",
                "taxid": 1080223,
                "species_taxid": 1080223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3043,
                "matched_fragments": 452,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter pacificus",
                "strain": "strain=CGMCC 1.11011",
                "accession": "GCA_014636355.1",
                "taxid": 1080223,
                "species_taxid": 1080223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2537,
                "matched_fragments": 452,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter acticola",
                "strain": "strain=KCTC 52212",
                "accession": "GCA_013177675.1",
                "taxid": 1849015,
                "species_taxid": 1849015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8053,
                "matched_fragments": 489,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter ellisii",
                "strain": "strain=LMG 26155",
                "accession": "GCA_003544915.1",
                "taxid": 913109,
                "species_taxid": 913109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7543,
                "matched_fragments": 449,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halarcobacter bivalviorum",
                "strain": "strain=LMG 26154",
                "accession": "GCA_003346815.1",
                "taxid": 663364,
                "species_taxid": 663364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4674,
                "matched_fragments": 421,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter venerupis",
                "strain": "strain=LMG 26156",
                "accession": "GCA_013201665.1",
                "taxid": 1054033,
                "species_taxid": 1054033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4622,
                "matched_fragments": 464,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter cloacae",
                "strain": "strain=CECT 7834",
                "accession": "GCA_004115805.1",
                "taxid": 1054034,
                "species_taxid": 1054034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3475,
                "matched_fragments": 410,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter aquimarinus",
                "strain": "strain=CECT 8442",
                "accession": "GCA_004115795.1",
                "taxid": 1315211,
                "species_taxid": 1315211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3313,
                "matched_fragments": 423,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter aquimarinus",
                "strain": "strain=W63",
                "accession": "GCA_013177635.1",
                "taxid": 1315211,
                "species_taxid": 1315211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3001,
                "matched_fragments": 426,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Halarcobacter] arenosus",
                "strain": "strain=CAU 1517",
                "accession": "GCA_005771535.1",
                "taxid": 2576037,
                "species_taxid": 2576037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0347,
                "matched_fragments": 403,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter molluscorum",
                "strain": "strain=CECT 7696",
                "accession": "GCA_003544935.1",
                "taxid": 1032072,
                "species_taxid": 1032072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5209,
                "matched_fragments": 375,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter molluscorum",
                "strain": "strain=F98-3",
                "accession": "GCA_002701265.1",
                "taxid": 1032072,
                "species_taxid": 1032072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4424,
                "matched_fragments": 373,
                "total_fragments": 1148,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013283835.1",
                "gtdb_species": "s__Poseidonibacter lekithochrous",
                "ani": 99.9942,
                "matched_fragments": 1148,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002470185.1",
                "gtdb_species": "s__Poseidonibacter sp002470185",
                "ani": 93.9813,
                "matched_fragments": 657,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009208075.1",
                "gtdb_species": "s__Poseidonibacter sp009208075",
                "ani": 81.4163,
                "matched_fragments": 545,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001956695.1",
                "gtdb_species": "s__Poseidonibacter parvus",
                "ani": 81.2699,
                "matched_fragments": 547,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003667345.1",
                "gtdb_species": "s__Poseidonibacter antarcticus",
                "ani": 80.806,
                "matched_fragments": 515,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018861145.1",
                "gtdb_species": "s__Poseidonibacter lekithochrous_A",
                "ani": 80.6959,
                "matched_fragments": 557,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002685075.1",
                "gtdb_species": "s__Poseidonibacter sp002685075",
                "ani": 80.6832,
                "matched_fragments": 438,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004214795.1",
                "gtdb_species": "s__Aliarcobacter pacificus",
                "ani": 80.3042,
                "matched_fragments": 452,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004116455.1",
                "gtdb_species": "s__Halarcobacter sp004116455",
                "ani": 79.8217,
                "matched_fragments": 426,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.86",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001895145.1",
                "gtdb_species": "s__Halarcobacter sp001895145",
                "ani": 79.6823,
                "matched_fragments": 505,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003346815.1",
                "gtdb_species": "s__Halarcobacter bivalviorum",
                "ani": 79.4909,
                "matched_fragments": 419,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013201665.1",
                "gtdb_species": "s__Aliarcobacter venerupis",
                "ani": 79.4444,
                "matched_fragments": 466,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013201935.1",
                "gtdb_species": "s__Aliarcobacter cloacae",
                "ani": 79.3579,
                "matched_fragments": 413,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013177635.1",
                "gtdb_species": "s__Aliarcobacter aquimarinus",
                "ani": 79.3339,
                "matched_fragments": 423,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004118855.1",
                "gtdb_species": "s__Halarcobacter sp004118855",
                "ani": 79.2256,
                "matched_fragments": 422,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005771535.1",
                "gtdb_species": "s__Halarcobacter arenosus",
                "ani": 79.0278,
                "matched_fragments": 404,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003544935.1",
                "gtdb_species": "s__Malaciobacter molluscorum",
                "ani": 78.5128,
                "matched_fragments": 373,
                "total_fragments": 1148,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Poseidonibacter",
        "lekithochrous"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}