{ "type": "genome", "identifier": "GCF_001879105.1", "organism": "Mangrovactinospora gilvigrisea", "title": "Mangrovactinospora gilvigrisea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Monash University Malaysia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001879105.1", "bioproject": "PRJNA224116", "biosample": "SAMN05898137", "wgs_master": "MLCF00000000.1", "refseq_category": "reference genome", "taxid": "1428644", "species_taxid": "1428644", "organism_name": "Mangrovactinospora gilvigrisea", "infraspecific_name": "strain=MUSC 26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/15", "asm_name": "ASM187910v1", "asm_submitter": "Monash University Malaysia", "gbrs_paired_asm": "GCA_001879105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/879/105/GCF_001879105.1_ASM187910v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5213277", "genome_size_ungapped": "5213277", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "206", "contig_count": "206", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001879105.1-RS_2024_03_12", "annotation_date": "2024-03-12", "total_gene_count": "4692", "protein_coding_gene_count": "4511", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-15", "dateModified": "2016-11-15", "datePublished": "2016-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Mangrovactinospora gilvigrisea" ], "sample_taxid": [ "1428644" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5213277", "Number of Sequences": "206", "Longest Sequences (bp)": "313105", "N50 (bp)": "45324", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.0", "Number of CDSs": "4539", "Average Protein Length": "324.6", "Coding Ratio (%)": "84.8", "Number of rRNAs": "2", "Number of tRNAs": "66", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mangrovactinospora gilvigriseus", "strain": "strain=MUSC 26", "accession": "GCA_001879105.1", "taxid": 1428644, "species_taxid": 1428644, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1630, "total_fragments": 1640, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 79.393, "matched_fragments": 626, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 79.3583, "matched_fragments": 701, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces radiopugnans", "strain": "strain=CGMCC 4.3519", "accession": "GCA_900110735.1", "taxid": 403935, "species_taxid": 403935, "relation_to_type": "type", "validated": true, "ani": 79.2055, "matched_fragments": 681, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 79.1462, "matched_fragments": 719, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fumanus", "strain": "strain=JCM 4477", "accession": "GCA_014655295.1", "taxid": 67302, "species_taxid": 67302, "relation_to_type": "type", "validated": true, "ani": 78.9852, "matched_fragments": 729, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptacidiphilus pinicola", "strain": "strain=MMS16-CNU450", "accession": "GCA_003258295.1", "taxid": 2219663, "species_taxid": 2219663, "relation_to_type": "type", "validated": true, "ani": 78.9712, "matched_fragments": 705, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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67331, "species_taxid": 67331, "relation_to_type": "type", "validated": true, "ani": 78.8457, "matched_fragments": 770, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces malaysiense", "strain": "strain=MUSC 136", "accession": "GCA_000980885.2", "taxid": 1428626, "species_taxid": 1428626, "relation_to_type": "type", "validated": true, "ani": 78.8232, "matched_fragments": 690, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora griseola", "strain": "strain=JCM 3339", "accession": "GCA_014648555.1", "taxid": 2064, "species_taxid": 2064, "relation_to_type": "type", "validated": true, "ani": 78.8144, "matched_fragments": 764, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=NRRL B-16185", "accession": "GCA_000716965.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 78.7855, "matched_fragments": 816, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora setae", "strain": "strain=KM-6054", "accession": "GCA_000269985.1", "taxid": 2066, "species_taxid": 2066, "relation_to_type": "type", "validated": true, "ani": 78.7611, "matched_fragments": 838, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 78.6742, "matched_fragments": 844, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 78.674, "matched_fragments": 807, 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}, { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 77.5604, "matched_fragments": 689, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001879105.1", "gtdb_species": "s__Streptomyces_G gilvigriseus", "ani": 100.0, "matched_fragments": 1630, "total_fragments": 1640, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000744815.1", "gtdb_species": "s__Streptacidiphilus_A oryzae", 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