{ "type": "genome", "identifier": "GCF_001880225.1", "organism": "Francisella frigiditurris", "title": "Francisella frigiditurris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Los Alamos National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001880225.1", "bioproject": "PRJNA224116", "biosample": "SAMN03107515", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1542390", "species_taxid": "1542390", "organism_name": "Francisella frigiditurris", "infraspecific_name": "strain=CA97-1460", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/17", "asm_name": "ASM188022v1", "asm_submitter": "Los Alamos National Laboratory", "gbrs_paired_asm": "GCA_001880225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/880/225/GCF_001880225.1_ASM188022v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1861609", "genome_size_ungapped": "1861609", "gc_percent": "31.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001880225.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1855", "protein_coding_gene_count": "1786", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-17", "dateModified": "2016-11-17", "datePublished": "2016-11-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Francisella frigiditurris" ], "sample_taxid": [ "1542390" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: CA" ], "sample_host_location_id": [], "data_size": "0.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1861609", "Number of Sequences": "2", "Longest Sequences (bp)": "1855434", "N50 (bp)": "1855434", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.2", "Number of CDSs": "1810", "Average Protein Length": "316.4", "Coding Ratio (%)": "92.3", "Number of rRNAs": "10", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Allofrancisella frigidaquae", "strain": "strain=SYSU 10HL1970", "accession": "GCA_012222825.1", "taxid": 1085644, "species_taxid": 1085644, "relation_to_type": "type", "validated": true, "ani": 78.5913, "matched_fragments": 139, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella uliginis", "strain": "strain=TX07-7310", "accession": "GCA_001895265.1", "taxid": 573570, "species_taxid": 573570, "relation_to_type": "type", "validated": true, "ani": 78.5369, "matched_fragments": 204, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella philomiragia", "strain": "strain=O#319L", "accession": "GCA_000833455.1", "taxid": 28110, "species_taxid": 28110, "relation_to_type": "type", "validated": true, "ani": 78.4626, "matched_fragments": 178, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001885235.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 78.4193, "matched_fragments": 167, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella noatunensis subsp. noatunensis", "strain": "strain=2005/50/F292-6", "accession": "GCA_009823375.1", "taxid": 360196, "species_taxid": 657445, "relation_to_type": "type", "validated": true, "ani": 78.2732, "matched_fragments": 135, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella salina", "strain": "strain=TX07-7308", "accession": "GCA_000219045.1", "taxid": 573569, "species_taxid": 573569, "relation_to_type": "type", "validated": true, "ani": 78.2565, "matched_fragments": 168, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella inopinata", "strain": "strain=SYSU YG23", "accession": "GCA_012222965.1", "taxid": 1085647, "species_taxid": 1085647, "relation_to_type": "type", "validated": true, "ani": 78.1874, "matched_fragments": 153, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella guangzhouensis", "strain": "strain=08HL01032", "accession": "GCA_000815225.1", "taxid": 594679, "species_taxid": 594679, "relation_to_type": "type", "validated": true, "ani": 78.1843, "matched_fragments": 143, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella tularensis subsp. novicida", "strain": "strain=U112", "accession": "GCA_000833375.1", "taxid": 264, "species_taxid": 263, "relation_to_type": "type", "validated": true, "ani": 78.1719, "matched_fragments": 167, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella tularensis subsp. novicida", "strain": "strain=U112", "accession": "GCA_000014645.1", "taxid": 264, "species_taxid": 263, "relation_to_type": "type", "validated": true, "ani": 78.0982, "matched_fragments": 168, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella halioticida", "strain": "strain=DSM 23729", "accession": "GCA_002211785.1", "taxid": 549298, "species_taxid": 549298, "relation_to_type": "type", "validated": true, "ani": 78.0911, "matched_fragments": 175, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001608445.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 78.0371, "matched_fragments": 162, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella inopinata", "strain": "strain=DSM 101834", "accession": "GCA_004365555.1", "taxid": 1085647, "species_taxid": 1085647, "relation_to_type": "type", "validated": true, "ani": 77.8983, "matched_fragments": 143, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella adeliensis", "strain": "strain=FDC440", "accession": "GCA_003290445.1", "taxid": 2007306, "species_taxid": 2007306, "relation_to_type": "type", "validated": true, "ani": 77.7435, "matched_fragments": 136, "total_fragments": 620, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001880225.1", "gtdb_species": "s__Pseudofrancisella frigiditurris", "ani": 100.0, "matched_fragments": 619, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Pseudofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003574475.2", "gtdb_species": "s__Pseudofrancisella aestuarii", "ani": 93.4632, "matched_fragments": 538, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Pseudofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001042525.2", "gtdb_species": "s__Francisella orientalis", "ani": 78.7847, "matched_fragments": 159, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "95.40", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.93", "num_clustered_genomes": 54, "status": "-" }, { "accession": "GCF_012222825.1", "gtdb_species": "s__Allofrancisella frigidaquae", "ani": 78.6671, "matched_fragments": 139, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001895265.1", "gtdb_species": "s__Francisella uliginis", "ani": 78.516, "matched_fragments": 205, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001885235.1", "gtdb_species": "s__Francisella hispaniensis", "ani": 78.3986, "matched_fragments": 168, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000815225.1", "gtdb_species": "s__Allofrancisella guangzhouensis", "ani": 78.2704, "matched_fragments": 145, "total_fragments": 620, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_012224145.1", "gtdb_species": "s__Francisella sp012224145", "ani": 78.264, "matched_fragments": 184, "total_fragments": 620, "gtdb_taxonomy": 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