{
    "type": "genome",
    "identifier": "GCF_001884135.1",
    "organism": "Bacillus nitratireducens",
    "title": "Bacillus nitratireducens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001884135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05231546",
        "wgs_master": "MAOC00000000.1",
        "refseq_category": "na",
        "taxid": "2026193",
        "species_taxid": "2026193",
        "organism_name": "Bacillus nitratireducens",
        "infraspecific_name": "strain=4049",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/18",
        "asm_name": "ASM188413v1",
        "asm_submitter": "The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources",
        "gbrs_paired_asm": "GCA_001884135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/884/135/GCF_001884135.1_ASM188413v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5487699",
        "genome_size_ungapped": "5487699",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "101",
        "contig_count": "101",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001884135.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "5678",
        "protein_coding_gene_count": "5411",
        "non_coding_gene_count": "32",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-18",
    "dateModified": "2016-11-18",
    "datePublished": "2016-11-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus nitratireducens"
        ],
        "sample_taxid": [
            "2026193"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "1.544 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5487699",
        "Number of Sequences": "101",
        "Longest Sequences (bp)": "501271",
        "N50 (bp)": "148012",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.3",
        "Number of CDSs": "5576",
        "Average Protein Length": "272.4",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacillus nitratireducens",
                "strain": "strain=4049",
                "accession": "GCA_001884135.1",
                "taxid": 2026193,
                "species_taxid": 2026193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1786,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus proteolyticus",
                "strain": "strain=TD42",
                "accession": "GCA_001884065.1",
                "taxid": 2026192,
                "species_taxid": 2026192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9203,
                "matched_fragments": 1595,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=ATCC 6462",
                "accession": "GCA_000832605.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8707,
                "matched_fragments": 1540,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=DSM 2048",
                "accession": "GCA_000003925.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8233,
                "matched_fragments": 1546,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=DSM 2048",
                "accession": "GCA_022630575.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7398,
                "matched_fragments": 1537,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus toyonensis",
                "strain": "strain=BCT-7112",
                "accession": "GCA_000496285.1",
                "taxid": 155322,
                "species_taxid": 155322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8586,
                "matched_fragments": 1409,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus sanguinis",
                "strain": "strain=BML-BC004",
                "accession": "GCA_018332475.1",
                "taxid": 2817476,
                "species_taxid": 2817476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5743,
                "matched_fragments": 1278,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus tropicus",
                "strain": "strain=N24",
                "accession": "GCA_001884035.1",
                "taxid": 2026188,
                "species_taxid": 2026188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2249,
                "matched_fragments": 1440,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus pacificus",
                "strain": "strain=EB422",
                "accession": "GCA_001884025.1",
                "taxid": 2026187,
                "species_taxid": 2026187,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.104,
                "matched_fragments": 1416,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus anthracis",
                "strain": "strain=Vollum",
                "accession": "GCA_022221345.1",
                "taxid": 1392,
                "species_taxid": 1392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0538,
                "matched_fragments": 1431,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus anthracis",
                "strain": "strain=Vollum",
                "accession": "GCA_000167275.1",
                "taxid": 1392,
                "species_taxid": 1392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9985,
                "matched_fragments": 1438,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus thuringiensis",
                "strain": "strain=ATCC 10792",
                "accession": "GCA_000161615.1",
                "taxid": 1428,
                "species_taxid": 1428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.9379,
                "matched_fragments": 1484,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus thuringiensis",
                "strain": "strain=ATCC 10792",
                "accession": "GCA_002119445.1",
                "taxid": 1428,
                "species_taxid": 1428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.8876,
                "matched_fragments": 1450,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus kexueae",
                "strain": "strain=KCTC 33881",
                "accession": "GCA_022809095.1",
                "taxid": 2078952,
                "species_taxid": 2078952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7061,
                "matched_fragments": 83,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus kestanbolensis",
                "strain": "strain=NCIMB 13971",
                "accession": "GCA_023653015.1",
                "taxid": 227476,
                "species_taxid": 227476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5597,
                "matched_fragments": 57,
                "total_fragments": 1790,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001884135.1",
                "gtdb_species": "s__Bacillus_A nitratireducens",
                "ani": 100.0,
                "matched_fragments": 1786,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 78,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001884065.1",
                "gtdb_species": "s__Bacillus_A proteolyticus",
                "ani": 94.9141,
                "matched_fragments": 1596,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.1182,
                "mean_intra_species_ani": "98.61",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002574955.1",
                "gtdb_species": "s__Bacillus_A cereus_AT",
                "ani": 94.5776,
                "matched_fragments": 1530,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.1182,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000832605.1",
                "gtdb_species": "s__Bacillus_A mycoides",
                "ani": 93.8707,
                "matched_fragments": 1540,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 125,
                "status": "-"
            },
            {
                "accession": "GCF_001757995.1",
                "gtdb_species": "s__Bacillus_A mycoides_B",
                "ani": 93.216,
                "matched_fragments": 1544,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_007673305.1",
                "gtdb_species": "s__Bacillus_A mycoides_C",
                "ani": 93.1903,
                "matched_fragments": 1391,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.83",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018742245.1",
                "gtdb_species": "s__Bacillus_A cereus_U",
                "ani": 92.9062,
                "matched_fragments": 1473,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_018966865.1",
                "gtdb_species": "s__Bacillus_A sp018966865",
                "ani": 92.8181,
                "matched_fragments": 1481,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.14",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000291355.1",
                "gtdb_species": "s__Bacillus_A cereus_O",
                "ani": 92.6516,
                "matched_fragments": 1431,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.56",
                "min_intra_species_ani": "96.56",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_015071065.1",
                "gtdb_species": "s__Bacillus_A cereus_BA",
                "ani": 92.5081,
                "matched_fragments": 1469,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.35",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002975175.1",
                "gtdb_species": "s__Bacillus_A sp002975175",
                "ani": 92.4185,
                "matched_fragments": 1497,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001884235.1",
                "gtdb_species": "s__Bacillus_A paramycoides",
                "ani": 91.1447,
                "matched_fragments": 1418,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.18",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001583695.1",
                "gtdb_species": "s__Bacillus_A wiedmannii",
                "ani": 91.0249,
                "matched_fragments": 1457,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 225,
                "status": "-"
            },
            {
                "accession": "GCF_000496285.1",
                "gtdb_species": "s__Bacillus_A toyonensis",
                "ani": 90.8345,
                "matched_fragments": 1412,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 279,
                "status": "-"
            },
            {
                "accession": "GCF_900094905.1",
                "gtdb_species": "s__Bacillus_A cereus_AG",
                "ani": 90.7446,
                "matched_fragments": 1417,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001884035.1",
                "gtdb_species": "s__Bacillus_A tropicus",
                "ani": 90.226,
                "matched_fragments": 1440,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.3658,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 109,
                "status": "-"
            },
            {
                "accession": "GCF_000742895.1",
                "gtdb_species": "s__Bacillus_A anthracis",
                "ani": 90.0632,
                "matched_fragments": 1449,
                "total_fragments": 1790,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A",
                "ani_circumscription_radius": 95.2518,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 417,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.176,
        "cell_length": 0.387,
        "doubling_h": -0.134,
        "growth_tmp": 31.412,
        "optimum_tmp": 33.64,
        "optimum_ph": 7.746,
        "genome_size": 4544138.117,
        "gc_content": 40.577,
        "coding_genes": 4334.002,
        "rRNA16S_genes": 9.859,
        "tRNA_genes": 88.223,
        "gram_stain": 0.993,
        "sporulation": 0.975,
        "motility": 0.841,
        "range_salinity": 0.6,
        "facultative_respiration": 0.16,
        "anaerobic_respiration": 0.011,
        "aerobic_respiration": 0.827,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.053,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bacillus",
        "nitratireducens"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}