{ "type": "genome", "identifier": "GCF_001885765.1", "organism": "Enterococcus aquimarinus", "title": "Enterococcus aquimarinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001885765.1", "bioproject": "PRJNA224116", "biosample": "SAMN03267160", "wgs_master": "JXKD00000000.1", "refseq_category": "reference genome", "taxid": "328396", "species_taxid": "328396", "organism_name": "Enterococcus aquimarinus", "infraspecific_name": "strain=DSM 17690", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/25", "asm_name": "ASM188576v1", "asm_submitter": "Inner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_001885765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/885/765/GCF_001885765.1_ASM188576v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2512430", "genome_size_ungapped": "2512430", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001885765.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2380", "protein_coding_gene_count": "2303", "non_coding_gene_count": "36", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-25", "dateModified": "2016-11-25", "datePublished": "2016-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus aquimarinus" ], "sample_taxid": [ "328396" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2512430", "Number of Sequences": "46", "Longest Sequences (bp)": "335777", "N50 (bp)": "145336", "Gap Ratio (%)": "0.000279", "GCcontent (%)": "38.7", "Number of CDSs": "2346", "Average Protein Length": "312.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 813, "total_fragments": 815, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 78.98, "matched_fragments": 272, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=DSM 20680", "accession": "GCA_001885845.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 78.0232, "matched_fragments": 79, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus casseliflavus", "strain": "strain=NBRC 100478", "accession": "GCA_001544095.1", "taxid": 37734, "species_taxid": 37734, "relation_to_type": "type", "validated": true, "ani": 77.8828, "matched_fragments": 81, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus penaei", "strain": "strain=CD276", "accession": "GCA_001998885.1", "taxid": 633807, "species_taxid": 633807, "relation_to_type": "type", "validated": true, "ani": 77.8345, "matched_fragments": 61, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.8022, "matched_fragments": 83, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus penaei", "strain": "strain=LMG 24833", "accession": "GCA_003987515.1", "taxid": 633807, "species_taxid": 633807, "relation_to_type": "type", "validated": true, "ani": 77.7955, "matched_fragments": 63, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7928, "matched_fragments": 85, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=ATCC 51263", "accession": "GCA_000406925.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 77.7788, "matched_fragments": 96, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rivorum", "strain": "strain=LMG 25899", "accession": "GCA_001742285.1", "taxid": 762845, "species_taxid": 762845, "relation_to_type": "type", "validated": true, "ani": 77.7554, "matched_fragments": 65, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7478, "matched_fragments": 86, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7201, "matched_fragments": 86, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=ATCC 51263", "accession": "GCA_000407225.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 77.7147, "matched_fragments": 96, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=FDAARGOS_1123", "accession": "GCA_016766815.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.6988, "matched_fragments": 84, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_000185365.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 77.6697, "matched_fragments": 105, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus columbae", "strain": "strain=DSM 7374", "accession": "GCA_001885835.1", "taxid": 1355, "species_taxid": 1355, "relation_to_type": "type", "validated": true, "ani": 77.6262, "matched_fragments": 91, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=NBRC 100490", "accession": "GCA_007990125.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.5773, "matched_fragments": 82, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_001886035.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.5666, "matched_fragments": 80, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_001885995.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 77.5614, "matched_fragments": 98, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=DSM 21767", "accession": "GCA_001886265.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 77.5448, "matched_fragments": 98, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.5363, "matched_fragments": 85, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=NBRC 101867", "accession": "GCA_007989705.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 77.4726, "matched_fragments": 101, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 77.4408, "matched_fragments": 72, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 77.4249, "matched_fragments": 71, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 77.2243, "matched_fragments": 78, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus allomyrinae", "strain": "strain=BWB3-3", "accession": "GCA_017829975.1", "taxid": 2794353, "species_taxid": 2794353, "relation_to_type": "type", "validated": true, "ani": 76.7281, "matched_fragments": 70, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001885765.1", "gtdb_species": "s__Enterococcus_I aquimarinus", "ani": 100.0, "matched_fragments": 813, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_019116505.1", "gtdb_species": "s__Enterococcus_I avicola", "ani": 79.1616, "matched_fragments": 237, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014635985.1", "gtdb_species": "s__Enterococcus_I alcedinis", "ani": 78.9634, "matched_fragments": 273, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016909125.1", "gtdb_species": "s__Enterococcus_I lemanii", "ani": 78.5019, "matched_fragments": 250, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002947535.1", "gtdb_species": "s__Enterococcus_B mundtii_B", "ani": 78.0639, "matched_fragments": 85, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017426705.1", "gtdb_species": "s__Enterococcus_F sp017426705", "ani": 78.042, "matched_fragments": 150, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002141365.1", "gtdb_species": "s__Enterococcus sp002141365", "ani": 77.8851, "matched_fragments": 82, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001544095.1", "gtdb_species": "s__Enterococcus_D casseliflavus", "ani": 77.8828, "matched_fragments": 81, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 83, "status": "-" }, { "accession": "GCF_001998885.1", "gtdb_species": "s__Vagococcus penaei", "ani": 77.8345, "matched_fragments": 61, "total_fragments": 815, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 96.3614, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.86", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_000406925.1", "gtdb_species": "s__Enterococcus_E columbae", "ani": 77.7788, "matched_fragments": 96, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001742285.1", "gtdb_species": "s__Enterococcus rivorum", "ani": 77.7554, "matched_fragments": 65, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000271405.2", "gtdb_species": "s__Enterococcus_B hirae", "ani": 77.7477, "matched_fragments": 86, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 203, "status": "-" }, { "accession": "GCF_000185365.1", "gtdb_species": "s__Enterococcus_G italicus", "ani": 77.6697, "matched_fragments": 105, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001297065.1", "gtdb_species": "s__Enterococcus_D sp001297065", "ani": 77.589, "matched_fragments": 74, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "96.72", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_009933175.1", "gtdb_species": "s__Enterococcus_B sp009933175", "ani": 77.586, "matched_fragments": 105, "total_fragments": 815, "gtdb_taxonomy": 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