{ "type": "genome", "identifier": "GCF_001885835.1", "organism": "Enterococcus columbae DSM 7374 = ATCC 51263", "title": "Enterococcus columbae DSM 7374 = ATCC 51263", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001885835.1", "bioproject": "PRJNA224116", "biosample": "SAMN03267165", "wgs_master": "JXKI00000000.1", "refseq_category": "na", "taxid": "1121865", "species_taxid": "1355", "organism_name": "Enterococcus columbae DSM 7374 = ATCC 51263", "infraspecific_name": "strain=DSM 7374", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/25", "asm_name": "ASM188583v1", "asm_submitter": "Inner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_001885835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/885/835/GCF_001885835.1_ASM188583v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2490820", "genome_size_ungapped": "2490820", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001885835.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2347", "protein_coding_gene_count": "2264", "non_coding_gene_count": "39", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-25", "dateModified": "2016-11-25", "datePublished": "2016-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus columbae DSM 7374 = ATCC 51263" ], "sample_taxid": [ "1121865" ], "sample_host_organism": [ "pigeon" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2490820", "Number of Sequences": "75", "Longest Sequences (bp)": "222167", "N50 (bp)": "89108", "Gap Ratio (%)": "0.000361", "GCcontent (%)": "36.3", "Number of CDSs": "2294", "Average Protein Length": "306.3", "Coding Ratio (%)": "84.6", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus columbae", "strain": "strain=DSM 7374", "accession": "GCA_001885835.1", "taxid": 1355, "species_taxid": 1355, 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