{ "type": "genome", "identifier": "GCF_001885995.1", "organism": "Enterococcus italicus DSM 15952", "title": "Enterococcus italicus DSM 15952", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001885995.1", "bioproject": "PRJNA224116", "biosample": "SAMN03267176", "wgs_master": "JXKT00000000.1", "refseq_category": "na", "taxid": "888064", "species_taxid": "246144", "organism_name": "Enterococcus italicus DSM 15952", "infraspecific_name": "strain=DSM 15952", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/25", "asm_name": "ASM188599v1", "asm_submitter": "Inner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_001885995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/885/995/GCF_001885995.1_ASM188599v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2322207", "genome_size_ungapped": "2322207", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "120", "contig_count": "120", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001885995.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2323", "protein_coding_gene_count": "2192", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-25", "dateModified": "2016-11-25", "datePublished": "2016-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus italicus DSM 15952" ], "sample_taxid": [ "888064" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.662 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2322207", "Number of Sequences": "120", "Longest Sequences (bp)": "154263", "N50 (bp)": "53900", "Gap Ratio (%)": "0.000646", "GCcontent (%)": "39.0", "Number of CDSs": "2242", "Average Protein Length": "300.2", "Coding Ratio (%)": "86.9", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_001885995.1", "taxid": 246144, "species_taxid": 246144, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407025.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 78.047, "matched_fragments": 156, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407605.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 78.0368, "matched_fragments": 158, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus halophilus subsp. halophilus", "strain": "strain=DSM 20339", "accession": "GCA_003841405.1", "taxid": 1513897, "species_taxid": 51669, "relation_to_type": "type", "validated": true, "ani": 77.9832, "matched_fragments": 60, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 77.8058, "matched_fragments": 90, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7971, "matched_fragments": 87, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 77.7892, "matched_fragments": 87, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 77.7759, "matched_fragments": 85, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus asini", "strain": "strain=DSM 11492", "accession": "GCA_001885725.1", "taxid": 57732, "species_taxid": 57732, "relation_to_type": "type", "validated": true, "ani": 77.3636, "matched_fragments": 63, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus halophilus subsp. flandriensis", "strain": "strain=DSM 23766", "accession": "GCA_002922845.1", "taxid": 1513898, "species_taxid": 51669, "relation_to_type": "type", "validated": true, "ani": 77.2175, "matched_fragments": 62, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000185365.1", "gtdb_species": "s__Enterococcus_G italicus", "ani": 99.9642, "matched_fragments": 706, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_009933175.1", "gtdb_species": "s__Enterococcus_B sp009933175", "ani": 79.4438, "matched_fragments": 102, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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