{ "type": "genome", "identifier": "GCF_001886035.1", "organism": "Enterococcus mundtii", "title": "Enterococcus mundtii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001886035.1", "bioproject": "PRJNA224116", "biosample": "SAMN03267178", "wgs_master": "JXKV00000000.1", "refseq_category": "na", "taxid": "53346", "species_taxid": "53346", "organism_name": "Enterococcus mundtii", "infraspecific_name": "strain=DSM 4838", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/25", "asm_name": "ASM188603v1", "asm_submitter": "Inner Mongolia Agricultural University", "gbrs_paired_asm": "GCA_001886035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/886/035/GCF_001886035.1_ASM188603v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3394411", "genome_size_ungapped": "3394264", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001886035.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "3162", "protein_coding_gene_count": "3054", "non_coding_gene_count": "31", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-25", "dateModified": "2016-11-25", "datePublished": "2016-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus mundtii" ], "sample_taxid": [ "53346" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.963 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3394411", "Number of Sequences": "85", "Longest Sequences (bp)": "236844", "N50 (bp)": "106993", "Gap Ratio (%)": "0.004448", "GCcontent (%)": "38.1", "Number of CDSs": "3106", "Average Protein Length": "306.2", "Coding Ratio (%)": "84.1", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_001886035.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1090, "total_fragments": 1093, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 1093, "total_fragments": 1093, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=NBRC 100490", "accession": "GCA_007990125.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 99.9892, "matched_fragments": 1063, "total_fragments": 1093, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus durans", "strain": "strain=FDAARGOS 1437", "accession": "GCA_019048325.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 80.1668, "matched_fragments": 368, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 80.0722, "matched_fragments": 359, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NCTC7171", "accession": "GCA_900447735.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 79.6921, "matched_fragments": 348, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 79.6212, "matched_fragments": 351, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", 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"num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.04, "cell_length": -0.019, "doubling_h": -0.346, "growth_tmp": 37.0, "optimum_tmp": 34.173, "optimum_ph": 9.6, "genome_size": 3184681.727, "gc_content": 38.337, "coding_genes": 2988.2, "rRNA16S_genes": 6.0, "tRNA_genes": 63.75, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "mundtii" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }