{ "type": "genome", "identifier": "GCF_001886735.1", "organism": "Sulfitobacter alexandrii", "title": "Sulfitobacter alexandrii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "East China Sea Fisheries Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001886735.1", "bioproject": "PRJNA224116", "biosample": "SAMN06013870", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1917485", "species_taxid": "1917485", "organism_name": "Sulfitobacter alexandrii", "infraspecific_name": "strain=AM1-D1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/28", "asm_name": "ASM188673v1", "asm_submitter": "East China Sea Fisheries Research Institute", "gbrs_paired_asm": "GCA_001886735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/886/735/GCF_001886735.1_ASM188673v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4691010", "genome_size_ungapped": "4691010", "gc_percent": "64.500000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "4598", "protein_coding_gene_count": "4480", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-28", "dateModified": "2016-11-28", "datePublished": "2016-11-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter alexandrii" ], "sample_taxid": [ "1917485" ], "sample_host_organism": [ "Alexandrium minutum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.297 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4691010", "Number of Sequences": "6", "Longest Sequences (bp)": "3840209", "N50 (bp)": "3840209", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "4598", "Average Protein Length": "311.8", "Coding Ratio (%)": "91.7", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, 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"below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 78.4331, "matched_fragments": 490, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.3301, "matched_fragments": 385, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 78.2747, "matched_fragments": 519, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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74348, "species_taxid": 74348, "relation_to_type": "type", "validated": true, "ani": 77.778, "matched_fragments": 443, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium confluentis", "strain": "strain=JSSK-17", "accession": "GCA_007923445.1", "taxid": 1958944, "species_taxid": 1958944, "relation_to_type": "type", "validated": true, "ani": 77.6428, "matched_fragments": 409, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 77.5918, "matched_fragments": 324, "total_fragments": 1561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", 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