{ "type": "genome", "identifier": "GCF_001889005.1", "organism": "Christiangramia salexigens", "title": "Christiangramia salexigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001889005.1", "bioproject": "PRJNA224116", "biosample": "SAMN05945920", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1913577", "species_taxid": "1913577", "organism_name": "Christiangramia salexigens", "infraspecific_name": "strain=LPB0144", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/05", "asm_name": "ASM188900v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001889005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/889/005/GCF_001889005.1_ASM188900v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2978889", "genome_size_ungapped": "2978889", "gc_percent": "38.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001889005.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "2695", "protein_coding_gene_count": "2623", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-05", "dateModified": "2016-12-05", "datePublished": "2016-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Christiangramia salexigens" ], "sample_taxid": [ "1913577" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2978889", "Number of Sequences": "1", "Longest Sequences (bp)": "2978889", "N50 (bp)": "2978889", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.2", "Number of CDSs": "2604", "Average Protein Length": "345.4", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gramella salexigens", "strain": "strain=LPB0144", "accession": "GCA_001889005.1", "taxid": 1913577, "species_taxid": 1913577, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 989, "total_fragments": 992, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 79.3803, "matched_fragments": 420, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella echinicola", "strain": "strain=DSM 19838", "accession": "GCA_000423065.1", "taxid": 279359, "species_taxid": 279359, "relation_to_type": "type", "validated": true, "ani": 79.3144, "matched_fragments": 399, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=KT0803", "accession": "GCA_000060345.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.2403, "matched_fragments": 418, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=CGMCC 1.15422", "accession": "GCA_014642775.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.0505, "matched_fragments": 413, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella aestuarii", "strain": "strain=BS12", "accession": "GCA_009735585.1", "taxid": 1028746, "species_taxid": 1028746, "relation_to_type": "type", "validated": true, "ani": 79.0255, "matched_fragments": 377, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella sabulilitoris", "strain": "strain=HSMS-1", "accession": "GCA_007050985.1", "taxid": 2583991, "species_taxid": 2583991, "relation_to_type": "type", "validated": true, "ani": 78.9945, "matched_fragments": 379, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella lutea", "strain": "strain=YJ019", "accession": "GCA_022489035.1", "taxid": 1607951, "species_taxid": 1607951, "relation_to_type": "type", "validated": true, "ani": 78.9681, "matched_fragments": 389, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella crocea", "strain": "strain=YB25", "accession": "GCA_022410465.1", "taxid": 2904124, "species_taxid": 2904124, "relation_to_type": "type", "validated": true, "ani": 78.8901, "matched_fragments": 383, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella portivictoriae", "strain": "strain=DSM 23547", "accession": "GCA_000423045.1", "taxid": 326069, "species_taxid": 326069, "relation_to_type": "type", "validated": true, "ani": 78.8355, "matched_fragments": 304, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zunongwangia mangrovi", "strain": "strain=DSM 24499", "accession": "GCA_900112105.1", "taxid": 1334022, "species_taxid": 1334022, "relation_to_type": "type", "validated": true, "ani": 77.4781, "matched_fragments": 174, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter lacus", "strain": "strain=LM13S", "accession": "GCA_020164555.1", "taxid": 2873599, "species_taxid": 2873599, "relation_to_type": "type", "validated": true, "ani": 77.2654, "matched_fragments": 214, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.6179, "matched_fragments": 50, "total_fragments": 992, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001889005.1", "gtdb_species": "s__Gramella salexigens", "ani": 100.0, "matched_fragments": 986, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 79.3801, "matched_fragments": 421, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105135.1", "gtdb_species": "s__Gramella sp900105135", "ani": 79.3328, "matched_fragments": 413, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423065.1", "gtdb_species": "s__Gramella echinicola", "ani": 79.3144, "matched_fragments": 399, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000060345.1", "gtdb_species": "s__Gramella forsetii", "ani": 79.2403, "matched_fragments": 418, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009735585.1", "gtdb_species": "s__Gramella aestuarii", "ani": 79.0255, "matched_fragments": 377, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007050985.1", "gtdb_species": "s__Gramella sabulilitoris", "ani": 78.999, "matched_fragments": 379, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004332155.1", "gtdb_species": "s__Gramella sp004332155", "ani": 78.7991, "matched_fragments": 369, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009735695.1", "gtdb_species": "s__Gramella sp009735695", "ani": 78.7334, "matched_fragments": 340, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006714895.1", "gtdb_species": "s__Gramella sp006714895", "ani": 78.6737, "matched_fragments": 335, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003024155.1", "gtdb_species": "s__Gramella fulva", "ani": 78.2196, "matched_fragments": 279, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168265.1", "gtdb_species": "s__Salegentibacter salarius", "ani": 77.7836, "matched_fragments": 199, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900104765.1", "gtdb_species": "s__Gillisia sp900104765", "ani": 77.6223, "matched_fragments": 177, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112105.1", "gtdb_species": "s__Zunongwangia mangrovi", "ani": 77.4781, "matched_fragments": 174, "total_fragments": 992, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zunongwangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Christiangramia", "salexigens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }