{ "type": "genome", "identifier": "GCF_001889045.1", "organism": "Tenacibaculum todarodis", "title": "Tenacibaculum todarodis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001889045.1", "bioproject": "PRJNA224116", "biosample": "SAMN05945923", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1850252", "species_taxid": "1850252", "organism_name": "Tenacibaculum todarodis", "infraspecific_name": "strain=LPB0136", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/05", "asm_name": "ASM188904v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_001889045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/889/045/GCF_001889045.1_ASM188904v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3019213", "genome_size_ungapped": "3019213", "gc_percent": "30.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "2738", "protein_coding_gene_count": "2679", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-05", "dateModified": "2016-12-05", "datePublished": "2016-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenacibaculum todarodis" ], "sample_taxid": [ "1850252" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.816 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3019213", "Number of Sequences": "1", "Longest Sequences (bp)": "3019213", "N50 (bp)": "3019213", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.7", "Number of CDSs": "2702", "Average Protein Length": "340.2", "Coding Ratio (%)": "91.3", "Number of rRNAs": "9", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1006, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 91.243, "matched_fragments": 809, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 80.3889, "matched_fragments": 556, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 80.0602, "matched_fragments": 512, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 79.7877, "matched_fragments": 533, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 79.7735, "matched_fragments": 499, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 79.5226, "matched_fragments": 499, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", 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"matched_fragments": 377, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum gallaicum", "strain": "strain=DSM 18841", "accession": "GCA_003387615.1", "taxid": 561505, "species_taxid": 561505, "relation_to_type": "type", "validated": true, "ani": 78.0622, "matched_fragments": 360, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001889045.1", "gtdb_species": "s__Tenacibaculum_A todarodis", "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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