{ "type": "genome", "identifier": "GCF_001890385.1", "organism": "Tardibacter chloracetimidivorans", "title": "Tardibacter chloracetimidivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "College of Agriculture and Life Science, Seoul National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001890385.1", "bioproject": "PRJNA224116", "biosample": "SAMN06050156", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1921510", "species_taxid": "1921510", "organism_name": "Tardibacter chloracetimidivorans", "infraspecific_name": "strain=JJ-A5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/07", "asm_name": "ASM189038v1", "asm_submitter": "College of Agriculture and Life Science, Seoul National University", "gbrs_paired_asm": "GCA_001890385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/385/GCF_001890385.1_ASM189038v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3787976", "genome_size_ungapped": "3787976", "gc_percent": "63.000000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-04", "total_gene_count": "3997", "protein_coding_gene_count": "3869", "non_coding_gene_count": "51", "pubmed_id": "29721829" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-07", "dateModified": "2016-12-07", "datePublished": "2016-12-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Tardibacter chloracetimidivorans" ], "sample_taxid": [ "1921510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.052 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3787976", "Number of Sequences": "5", "Longest Sequences (bp)": "3381342", "N50 (bp)": "3381342", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "3964", "Average Protein Length": "286.4", "Coding Ratio (%)": "89.9", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tardibacter chloracetimidivorans", "strain": "strain=JJ-A5", "accession": "GCA_001890385.1", "taxid": 1921510, "species_taxid": 1921510, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1258, "total_fragments": 1261, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 79.9373, "matched_fragments": 292, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas paucimobilis", "strain": "strain=NBRC 13935", "accession": "GCA_000739895.2", "taxid": 13689, "species_taxid": 13689, "relation_to_type": "type", "validated": true, "ani": 79.2218, "matched_fragments": 229, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas fennica", "strain": "strain=K101", "accession": "GCA_003034225.1", "taxid": 114404, "species_taxid": 114404, "relation_to_type": "type", "validated": true, "ani": 78.9689, "matched_fragments": 323, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=NBRC 15099", "accession": "GCA_001592345.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 78.7363, "matched_fragments": 221, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=DSM 7418", "accession": "GCA_002374855.1", "taxid": 28212, "species_taxid": 28212, "relation_to_type": "type", "validated": true, "ani": 78.5918, "matched_fragments": 241, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, "relation_to_type": "type", "validated": true, "ani": 78.3452, "matched_fragments": 187, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 78.3262, "matched_fragments": 261, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 78.1797, "matched_fragments": 281, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas solaris", "strain": "strain=R4DWN", "accession": "GCA_007785815.1", "taxid": 2529389, "species_taxid": 2529389, "relation_to_type": "type", "validated": true, "ani": 78.1226, "matched_fragments": 241, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 78.0988, "matched_fragments": 262, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella microcystinivorans", "strain": "strain=DSM 19791", "accession": "GCA_003634215.1", "taxid": 335406, "species_taxid": 335406, "relation_to_type": "type", "validated": true, "ani": 77.9027, "matched_fragments": 199, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changbaiensis", "strain": "strain=NBRC 104936", "accession": "GCA_000974765.1", "taxid": 529705, "species_taxid": 529705, "relation_to_type": "type", "validated": true, "ani": 77.8985, "matched_fragments": 210, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus phycosphaerae", "strain": "strain=MK52", "accession": "GCA_011044255.1", "taxid": 2711156, "species_taxid": 2711156, "relation_to_type": "type", "validated": true, "ani": 77.8623, "matched_fragments": 234, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 77.8514, "matched_fragments": 202, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 77.7141, "matched_fragments": 185, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 77.569, "matched_fragments": 176, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 77.5441, "matched_fragments": 209, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomicrobium astaxanthinifaciens", "strain": "strain=JCM 18551", "accession": "GCA_022865105.1", "taxid": 1227949, "species_taxid": 1227949, "relation_to_type": "type", "validated": true, "ani": 77.5099, "matched_fragments": 149, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas corticis", "strain": "strain=36D10-4-7", "accession": 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2908641, "species_taxid": 2908641, "relation_to_type": "type", "validated": true, "ani": 77.3585, "matched_fragments": 163, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter glacialis", "strain": "strain=CGMCC 1.15519", "accession": "GCA_014643455.1", "taxid": 1614636, "species_taxid": 1614636, "relation_to_type": "type", "validated": true, "ani": 76.7847, "matched_fragments": 139, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001890385.1", "gtdb_species": "s__Tardibacter chloracetimidivorans", "ani": 100.0, "matched_fragments": 1257, "total_fragments": 1261, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Tardibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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