{ "type": "genome", "identifier": "GCF_001890925.1", "organism": "Planktotalea frisia", "title": "Planktotalea frisia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001890925.1", "bioproject": "PRJNA224116", "biosample": "SAMN05893588", "wgs_master": "MLCB00000000.1", "refseq_category": "reference genome", "taxid": "696762", "species_taxid": "696762", "organism_name": "Planktotalea frisia", "infraspecific_name": "strain=SH6-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/07", "asm_name": "ASM189092v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_001890925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/890/925/GCF_001890925.1_ASM189092v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4106736", "genome_size_ungapped": "4106736", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "227", "contig_count": "227", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001890925.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4150", "protein_coding_gene_count": "4028", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-07", "dateModified": "2016-12-07", "datePublished": "2016-12-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Planktotalea frisia" ], "sample_taxid": [ "696762" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: North Sea" ], "sample_host_location_id": [], "data_size": "1.176 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4106736", "Number of Sequences": "227", "Longest Sequences (bp)": "180847", "N50 (bp)": "40535", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "4082", "Average Protein Length": "298.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planktotalea frisia", "strain": "strain=SH6-1", "accession": "GCA_001890925.1", "taxid": 696762, "species_taxid": 696762, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1251, "total_fragments": 1260, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planktotalea frisia", "strain": "strain=DSM 23709", "accession": "GCA_003254185.1", "taxid": 696762, "species_taxid": 696762, "relation_to_type": "type", "validated": true, "ani": 99.973, "matched_fragments": 1251, "total_fragments": 1260, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cognatishimia activa", "strain": "strain=CECT 5113", "accession": "GCA_001458335.1", "taxid": 1715691, "species_taxid": 1715691, "relation_to_type": "type", "validated": true, "ani": 80.5924, "matched_fragments": 134, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planktotalea arctica", "strain": "strain=IMCC9565", "accession": "GCA_002105285.1", "taxid": 1481893, "species_taxid": 1481893, "relation_to_type": "type", "validated": true, "ani": 79.4706, "matched_fragments": 525, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", 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