{
    "type": "genome",
    "identifier": "GCF_001894985.1",
    "organism": "Rhodococcus tukisamuensis NBRC 100609",
    "title": "Rhodococcus tukisamuensis NBRC 100609",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001894985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00046768",
        "wgs_master": "BCXG00000000.1",
        "refseq_category": "na",
        "taxid": "1219027",
        "species_taxid": "168276",
        "organism_name": "Rhodococcus tukisamuensis NBRC 100609",
        "infraspecific_name": "strain=NBRC 100609",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/05",
        "asm_name": "ASM189498v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_001894985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/894/985/GCF_001894985.1_ASM189498v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5486610",
        "genome_size_ungapped": "5486610",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "66",
        "contig_count": "66",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001894985.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "5055",
        "protein_coding_gene_count": "4910",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-05",
    "dateModified": "2016-12-05",
    "datePublished": "2016-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodococcus tukisamuensis NBRC 100609"
        ],
        "sample_taxid": [
            "1219027"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.483 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5486610",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "431736",
        "N50 (bp)": "182284",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "5012",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodococcus tukisamuensis",
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                "species_taxid": 168276,
                "relation_to_type": "type",
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            },
            {
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                "ani_threshold": 95,
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            },
            {
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                "status": "below_threshold"
            },
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                "organism_name": "Rhodococcus spelaei",
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                "species_taxid": 2546320,
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                "total_fragments": 1801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus maanshanensis",
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                "species_taxid": 183556,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus maanshanensis",
                "strain": "strain=DSM 44675",
                "accession": "GCA_900109405.1",
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                "relation_to_type": "type",
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                "ani": 83.389,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella defluvii",
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                "accession": "GCA_000738775.1",
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                "relation_to_type": "type",
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                "total_fragments": 1801,
                "ani_threshold": 95,
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        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "mean_intra_species_af": "0.99",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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            },
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                "num_clustered_genomes": 23,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.123,
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        "rRNA16S_genes": 4.1,
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        "bacillus_cell_shape": 0.421,
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        "coccobacillus_cell_shape": 0.157,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Rhodococcus",
        "tukisamuensis",
        "NBRC",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}