{ "type": "genome", "identifier": "GCF_001895005.1", "organism": "Rhodococcus yunnanensis NBRC 103083", "title": "Rhodococcus yunnanensis NBRC 103083", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001895005.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046770", "wgs_master": "BCXH00000000.1", "refseq_category": "reference genome", "taxid": "1219029", "species_taxid": "278209", "organism_name": "Rhodococcus yunnanensis NBRC 103083", "infraspecific_name": "strain=NBRC 103083", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/05", "asm_name": "ASM189500v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_001895005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/895/005/GCF_001895005.1_ASM189500v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6373933", "genome_size_ungapped": "6373933", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001895005.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "5874", "protein_coding_gene_count": "5756", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-05", "dateModified": "2016-12-05", "datePublished": "2016-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus yunnanensis NBRC 103083" ], "sample_taxid": [ "1219029" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.764 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6373933", "Number of Sequences": "68", "Longest Sequences (bp)": "945107", "N50 (bp)": "230132", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "5824", "Average Protein Length": "328.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus yunnanensis", "strain": "strain=NBRC 103083", "accession": "GCA_001895005.1", "taxid": 278209, "species_taxid": 278209, 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"below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 77.5225, "matched_fragments": 405, "total_fragments": 2094, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001895005.1", "gtdb_species": "s__Rhodococcus_B yunnanensis", "ani": 100.0, "matched_fragments": 2090, "total_fragments": 2094, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900188125.1", "gtdb_species": 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