{
    "type": "genome",
    "identifier": "GCF_001895085.1",
    "organism": "Mariprofundus micogutta",
    "title": "Mariprofundus micogutta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chemosymbiosis system genomics Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001895085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00053330",
        "wgs_master": "BDFD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1921010",
        "species_taxid": "1921010",
        "organism_name": "Mariprofundus micogutta",
        "infraspecific_name": "strain=ET2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/25",
        "asm_name": "ASM189508v1",
        "asm_submitter": "Chemosymbiosis system genomics Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology",
        "gbrs_paired_asm": "GCA_001895085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/895/085/GCF_001895085.1_ASM189508v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2497805",
        "genome_size_ungapped": "2497805",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001895085.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "2470",
        "protein_coding_gene_count": "2393",
        "non_coding_gene_count": "58",
        "pubmed_id": "27766355"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-25",
    "dateModified": "2016-11-25",
    "datePublished": "2016-11-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mariprofundus micogutta"
        ],
        "sample_taxid": [
            "1921010"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Izu-Ogasawara Arc"
        ],
        "sample_host_location_id": [],
        "data_size": "0.713 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2497805",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "249769",
        "N50 (bp)": "105204",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.8",
        "Number of CDSs": "2391",
        "Average Protein Length": "312.6",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mariprofundus micogutta",
                "strain": "strain=ET2",
                "accession": "GCA_001895085.1",
                "taxid": 1921010,
                "species_taxid": 1921010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 801,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mariprofundus aestuarium",
                "strain": "strain=CP-5",
                "accession": "GCA_002795805.1",
                "taxid": 1921086,
                "species_taxid": 1921086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2986,
                "matched_fragments": 246,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mariprofundus ferrinatatus",
                "strain": "strain=CP-8",
                "accession": "GCA_002795825.1",
                "taxid": 1921087,
                "species_taxid": 1921087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7433,
                "matched_fragments": 168,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mariprofundus ferrooxydans",
                "strain": "strain=PV-1",
                "accession": "GCA_000153765.1",
                "taxid": 314344,
                "species_taxid": 314344,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9108,
                "matched_fragments": 162,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mariprofundus erugo",
                "strain": "strain=P3",
                "accession": "GCA_005818865.1",
                "taxid": 2528639,
                "species_taxid": 2528639,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.673,
                "matched_fragments": 132,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001895085.1",
                "gtdb_species": "s__Mariprofundus micogutta",
                "ani": 100.0,
                "matched_fragments": 801,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001871925.1",
                "gtdb_species": "s__Mariprofundus sp001871925",
                "ani": 79.2089,
                "matched_fragments": 345,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013387475.1",
                "gtdb_species": "s__Mariprofundus sp013387475",
                "ani": 78.4606,
                "matched_fragments": 268,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013387455.1",
                "gtdb_species": "s__Mariprofundus sp013387455",
                "ani": 78.4459,
                "matched_fragments": 284,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002795805.1",
                "gtdb_species": "s__Mariprofundus aestuarium",
                "ani": 78.2986,
                "matched_fragments": 246,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002791575.1",
                "gtdb_species": "s__Mariprofundus sp002791575",
                "ani": 76.9805,
                "matched_fragments": 149,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Zetaproteobacteria;o__Mariprofundales;f__Mariprofundaceae;g__Mariprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 6.35,
        "genome_size": 2497130.0,
        "gc_content": 48.76,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mariprofundus",
        "micogutta"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}