{ "type": "genome", "identifier": "GCF_001895205.1", "organism": "Vibrio injensis", "title": "Vibrio injensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001895205.1", "bioproject": "PRJNA224116", "biosample": "SAMD00066877", "wgs_master": "BDJF00000000.1", "refseq_category": "reference genome", "taxid": "1307414", "species_taxid": "1307414", "organism_name": "Vibrio injensis", "infraspecific_name": "strain=M12-1144", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/25", "asm_name": "ASM189520v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_001895205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/895/205/GCF_001895205.1_ASM189520v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3670882", "genome_size_ungapped": "3670776", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001895205.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "3351", "protein_coding_gene_count": "3217", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-25", "dateModified": "2016-11-25", "datePublished": "2016-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio injensis" ], "sample_taxid": [ "1307414" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Busan, Paik Hospital" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3670882", "Number of Sequences": "33", "Longest Sequences (bp)": "781765", "N50 (bp)": "581069", "Gap Ratio (%)": "0.003078", "GCcontent (%)": "44.0", "Number of CDSs": "3264", "Average Protein Length": "325.7", "Coding Ratio (%)": "86.9", "Number of rRNAs": "2", "Number of tRNAs": "75", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio injensis", "strain": "strain=M12-1144", "accession": "GCA_001895205.1", "taxid": 1307414, "species_taxid": 1307414, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1208, "total_fragments": 1208, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio metschnikovii", "strain": "strain=CIP 69.14", "accession": "GCA_000176155.1", "taxid": 28172, "species_taxid": 28172, "relation_to_type": "type", "validated": true, "ani": 92.8731, "matched_fragments": 1042, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio metschnikovii", "strain": "strain=NCTC8443", "accession": "GCA_900460295.1", "taxid": 28172, "species_taxid": 28172, "relation_to_type": "type", "validated": true, "ani": 92.8098, "matched_fragments": 1056, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fujianensis", "strain": "strain=FJ201301", "accession": "GCA_002749895.1", "taxid": 1974215, "species_taxid": 1974215, "relation_to_type": "type", "validated": true, "ani": 80.796, "matched_fragments": 521, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cincinnatiensis", "strain": "strain=NCTC12012", "accession": "GCA_900460255.1", "taxid": 675, "species_taxid": 675, "relation_to_type": "type", "validated": true, "ani": 80.2674, "matched_fragments": 499, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cincinnatiensis", "strain": "strain=DSM 19608", "accession": "GCA_900167345.1", "taxid": 675, "species_taxid": 675, "relation_to_type": "type", "validated": true, "ani": 80.1968, "matched_fragments": 502, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=NCTC12159", "accession": "GCA_900452855.1", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 78.8666, "matched_fragments": 340, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": "GCA_001989995.2", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 78.7071, "matched_fragments": 312, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio metoecus", "strain": "strain=OP3H", "accession": "GCA_000696385.1", "taxid": 1481663, "species_taxid": 1481663, "relation_to_type": "type", "validated": true, "ani": 78.3033, "matched_fragments": 309, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio porteresiae", "strain": "strain=MSSRF30", "accession": "GCA_024347055.1", "taxid": 435912, "species_taxid": 435912, "relation_to_type": "type", "validated": true, "ani": 78.2399, "matched_fragments": 254, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tasmaniensis", "strain": "strain=LMG 20012", "accession": "GCA_024347635.1", "taxid": 212663, "species_taxid": 212663, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2375, "matched_fragments": 185, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.1317, "matched_fragments": 218, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 78.0993, "matched_fragments": 193, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0423, "matched_fragments": 237, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0263, "matched_fragments": 234, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio spartinae", "strain": "strain=CECT 9026", "accession": "GCA_024347135.1", "taxid": 1918945, "species_taxid": 1918945, "relation_to_type": "type", "validated": true, "ani": 77.9668, "matched_fragments": 166, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001895205.1", "gtdb_species": 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83.9834, "matched_fragments": 511, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002749895.1", "gtdb_species": "s__Vibrio fujianensis", "ani": 80.8368, "matched_fragments": 519, "total_fragments": 1208, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900167345.1", "gtdb_species": "s__Vibrio cincinnatiensis", "ani": 80.1965, "matched_fragments": 502, 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