{ "type": "genome", "identifier": "GCF_001895265.1", "organism": "Francisella uliginis", "title": "Francisella uliginis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Los Alamos National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001895265.1", "bioproject": "PRJNA224116", "biosample": "SAMN05464625", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "573570", "species_taxid": "573570", "organism_name": "Francisella uliginis", "infraspecific_name": "strain=TX07-7310", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/09", "asm_name": "ASM189526v1", "asm_submitter": "Los Alamos National Laboratory", "gbrs_paired_asm": "GCA_001895265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/895/265/GCF_001895265.1_ASM189526v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2237379", "genome_size_ungapped": "2237379", "gc_percent": "31.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001895265.1-RS_2024_06_16", "annotation_date": "2024-06-16", "total_gene_count": "2084", "protein_coding_gene_count": "2012", "non_coding_gene_count": "52", "pubmed_id": "27881415" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-09", "dateModified": "2016-12-09", "datePublished": "2016-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Francisella uliginis" ], "sample_taxid": [ "573570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Galveston Bay, Houston, Texas" ], "sample_host_location_id": [], "data_size": "0.614 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2237379", "Number of Sequences": "1", "Longest Sequences (bp)": "2237379", "N50 (bp)": "2237379", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.6", "Number of CDSs": "2033", "Average Protein Length": "334.6", "Coding Ratio (%)": "91.2", "Number of rRNAs": "10", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Francisella uliginis", "strain": "strain=TX07-7310", "accession": "GCA_001895265.1", "taxid": 573570, "species_taxid": 573570, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 745, "total_fragments": 745, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Francisella halioticida", "strain": "strain=DSM 23729", "accession": "GCA_002211785.1", "taxid": 549298, "species_taxid": 549298, "relation_to_type": "type", "validated": true, "ani": 84.5874, "matched_fragments": 532, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001885235.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 80.0882, "matched_fragments": 348, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001608445.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 80.0096, "matched_fragments": 352, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella noatunensis subsp. noatunensis", "strain": "strain=2005/50/F292-6", "accession": "GCA_009823375.1", "taxid": 360196, "species_taxid": 657445, "relation_to_type": "type", "validated": true, "ani": 79.932, "matched_fragments": 295, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella philomiragia", "strain": "strain=ATCC 25015", "accession": "GCA_000156715.1", "taxid": 28110, "species_taxid": 28110, "relation_to_type": "type", "validated": true, "ani": 79.8674, "matched_fragments": 363, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella philomiragia", "strain": "strain=O#319L", "accession": "GCA_000833455.1", "taxid": 28110, "species_taxid": 28110, "relation_to_type": "type", "validated": true, "ani": 79.7681, "matched_fragments": 371, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000764555.1", "gtdb_species": "s__Francisella sp000764555", "ani": 80.4797, "matched_fragments": 365, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001885235.1", "gtdb_species": "s__Francisella hispaniensis", "ani": 80.0882, "matched_fragments": 348, "total_fragments": 745, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Francisella", "uliginis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }