{ "type": "genome", "identifier": "GCF_001907235.1", "organism": "Buchananella hordeovulneris", "title": "Buchananella hordeovulneris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001907235.1", "bioproject": "PRJNA224116", "biosample": "SAMN06092722", "wgs_master": "MQVS00000000.1", "refseq_category": "reference genome", "taxid": "52770", "species_taxid": "52770", "organism_name": "Buchananella hordeovulneris", "infraspecific_name": "strain=DSM 20732", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/16", "asm_name": "ASM190723v1", "asm_submitter": "China CDC", "gbrs_paired_asm": "GCA_001907235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/907/235/GCF_001907235.1_ASM190723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2521171", "genome_size_ungapped": "2521161", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001907235.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2235", "protein_coding_gene_count": "2161", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-16", "dateModified": "2016-12-16", "datePublished": "2016-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Buchananella hordeovulneris" ], "sample_taxid": [ "52770" ], "sample_host_organism": [ "canine" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.701 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2521171", "Number of Sequences": "30", "Longest Sequences (bp)": "386625", "N50 (bp)": "186221", "Gap Ratio (%)": "0.000397", "GCcontent (%)": "67.2", "Number of CDSs": "2200", "Average Protein Length": "342.5", "Coding Ratio (%)": "89.7", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Buchananella hordeovulneris", "strain": "strain=DSM 20732", "accession": "GCA_001907235.1", "taxid": 52770, "species_taxid": 52770, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 827, "total_fragments": 828, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomyces succiniciruminis", "strain": "strain=AM4", "accession": "GCA_900002405.2", "taxid": 1522002, "species_taxid": 1522002, "relation_to_type": "type", "validated": true, "ani": 77.4707, "matched_fragments": 140, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces weissii", "strain": "strain=CCUG 61299", "accession": "GCA_016598775.1", "taxid": 675090, "species_taxid": 675090, "relation_to_type": "type", "validated": true, "ani": 77.3989, "matched_fragments": 155, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces urogenitalis", "strain": "strain=DSM 15434", "accession": "GCA_000159035.1", "taxid": 103621, "species_taxid": 103621, "relation_to_type": "type", "validated": true, "ani": 77.3093, "matched_fragments": 121, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces respiraculi", "strain": "strain=ZJ750", "accession": "GCA_014595995.2", "taxid": 2744574, "species_taxid": 2744574, "relation_to_type": "type", "validated": true, "ani": 77.2458, "matched_fragments": 126, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces oris", "strain": "strain=FDAARGOS_1051", "accession": "GCA_016127955.1", "taxid": 544580, "species_taxid": 544580, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2326, "matched_fragments": 130, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces ruminicola", "strain": "strain=DSM 27982", "accession": "GCA_900103885.1", "taxid": 332524, "species_taxid": 332524, "relation_to_type": "type", "validated": true, "ani": 77.2214, "matched_fragments": 158, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces dentalis", "strain": "strain=DSM 19115", "accession": "GCA_000429225.1", "taxid": 272548, "species_taxid": 272548, "relation_to_type": "type", "validated": true, "ani": 77.111, "matched_fragments": 153, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces howellii", "strain": "strain=NCTC11636", "accession": "GCA_900637165.1", "taxid": 52771, "species_taxid": 52771, "relation_to_type": "type", "validated": true, "ani": 77.1026, "matched_fragments": 131, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces howellii", "strain": "strain=Sh 7/4276", "accession": "GCA_009935825.1", "taxid": 52771, "species_taxid": 52771, "relation_to_type": "type", "validated": true, "ani": 77.0931, "matched_fragments": 129, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia thermotolerans", "strain": "strain=DSM 21501", "accession": "GCA_009299305.1", "taxid": 527326, "species_taxid": 527326, "relation_to_type": "type", "validated": true, "ani": 76.8738, "matched_fragments": 187, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia thermotolerans", "strain": "strain=NBRC 104148", "accession": "GCA_009193185.1", "taxid": 527326, "species_taxid": 527326, "relation_to_type": "type", "validated": true, "ani": 76.8637, "matched_fragments": 197, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia ruanii", "strain": "strain=JCM 15130", "accession": "GCA_009193175.1", "taxid": 348442, "species_taxid": 348442, "relation_to_type": "type", "validated": true, "ani": 76.8567, "matched_fragments": 182, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": 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"matched_fragments": 107, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 76.0549, "matched_fragments": 63, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 76.0153, "matched_fragments": 60, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 76.0053, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter phaseoli", "strain": "strain=LPPA 982", "accession": "GCA_021922925.1", "taxid": 1734031, "species_taxid": 1734031, "relation_to_type": "type", "validated": true, "ani": 75.8808, "matched_fragments": 69, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=ATCC 10253", "accession": "GCA_003076355.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 75.8541, "matched_fragments": 70, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces megasporus", "strain": "strain=NRRL B-16372", "accession": "GCA_000718985.1", "taxid": 44060, "species_taxid": 44060, "relation_to_type": "type", "validated": true, "ani": 75.8163, "matched_fragments": 109, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 75.5671, "matched_fragments": 110, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sulphurea", "strain": "strain=DSM 46092", "accession": "GCA_002564045.1", "taxid": 76022, "species_taxid": 76022, "relation_to_type": "type", "validated": true, "ani": 75.539, "matched_fragments": 84, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macrotermitis", "strain": "strain=RB68", "accession": "GCA_009604375.1", "taxid": 2585200, "species_taxid": 2585200, "relation_to_type": "type", "validated": true, "ani": 75.537, "matched_fragments": 150, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001907235.1", "gtdb_species": "s__Buchananella hordeovulneris", "ani": 100.0, "matched_fragments": 827, "total_fragments": 828, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Buchananella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900002405.1", "gtdb_species": "s__Actinomyces succiniciruminis", "ani": 77.4295, "matched_fragments": 142, "total_fragments": 828, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces", "ani_circumscription_radius": 96.3414, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.87", 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