{ "type": "genome", "identifier": "GCF_001911425.1", "organism": "Mucilaginibacter polytrichastri", "title": "Mucilaginibacter polytrichastri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Capital Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001911425.1", "bioproject": "PRJNA224116", "biosample": "SAMN05415089", "wgs_master": "MPPL00000000.1", "refseq_category": "reference genome", "taxid": "1302689", "species_taxid": "1302689", "organism_name": "Mucilaginibacter polytrichastri", "infraspecific_name": "strain=RG4-7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/21", "asm_name": "ASM191142v1", "asm_submitter": "Capital Normal University", "gbrs_paired_asm": "GCA_001911425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/911/425/GCF_001911425.1_ASM191142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5843004", "genome_size_ungapped": "5819050", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_001911425.1-RS_2024_07_09", "annotation_date": "2024-07-09", "total_gene_count": "5146", "protein_coding_gene_count": "5060", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-21", "dateModified": "2016-12-21", "datePublished": "2016-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter polytrichastri" ], "sample_taxid": [ "1302689" ], "sample_host_organism": [ "Polytrichum formosum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Tibet" ], "sample_host_location_id": [], "data_size": "1.646 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5843004", "Number of Sequences": "3", "Longest Sequences (bp)": "5756580", "N50 (bp)": "5756580", "Gap Ratio (%)": "0.409960", "GCcontent (%)": "42.0", "Number of CDSs": "5006", "Average Protein Length": "340.2", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=RG4-7", "accession": "GCA_001911425.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 1940, "total_fragments": 1946, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter polytrichastri", "strain": "strain=DSM 26907", "accession": "GCA_900116355.1", "taxid": 1302689, "species_taxid": 1302689, "relation_to_type": "type", "validated": true, "ani": 99.9726, "matched_fragments": 1914, "total_fragments": 1946, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 80.4554, "matched_fragments": 844, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter aquatilis", "strain": "strain=HME9299", "accession": "GCA_009755275.1", "taxid": 1517760, "species_taxid": 1517760, "relation_to_type": "type", "validated": true, "ani": 77.8406, "matched_fragments": 222, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 77.6216, "matched_fragments": 368, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.544, "matched_fragments": 292, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.5435, "matched_fragments": 228, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.539, "matched_fragments": 313, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginkgonis", "strain": "strain=HMF7856", "accession": "GCA_009754905.2", "taxid": 2682091, "species_taxid": 2682091, "relation_to_type": "type", "validated": true, "ani": 77.4952, "matched_fragments": 271, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter galii", "strain": "strain=CCM 8711", "accession": "GCA_014635825.1", "taxid": 2005073, "species_taxid": 2005073, "relation_to_type": "type", "validated": true, "ani": 77.4696, "matched_fragments": 323, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.4522, "matched_fragments": 296, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.4445, "matched_fragments": 237, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.4215, "matched_fragments": 291, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter yixingensis", "strain": "strain=DSM 26809", "accession": "GCA_003050755.1", "taxid": 1295612, "species_taxid": 1295612, "relation_to_type": "type", "validated": true, "ani": 77.4, "matched_fragments": 226, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.3243, "matched_fragments": 327, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 76.72, "matched_fragments": 195, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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"GCF_014773275.1", "gtdb_species": "s__Mucilaginibacter rigui", "ani": 77.7675, "matched_fragments": 328, "total_fragments": 1946, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101875.1", "gtdb_species": "s__Mucilaginibacter pineti", "ani": 77.6216, "matched_fragments": 368, "total_fragments": 1946, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014773245.1", 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"growth_tmp": 25.111, "optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 5815702.0, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "polytrichastri" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }