{
    "type": "genome",
    "identifier": "GCF_001921845.1",
    "organism": "Streptococcus cuniculi",
    "title": "Streptococcus cuniculi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Centers for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001921845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06174763",
        "wgs_master": "MSJM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1432788",
        "species_taxid": "1432788",
        "organism_name": "Streptococcus cuniculi",
        "infraspecific_name": "strain=CCUG 65085",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/24",
        "asm_name": "ASM192184v1",
        "asm_submitter": "Centers for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_001921845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/921/845/GCF_001921845.1_ASM192184v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2094853",
        "genome_size_ungapped": "2094853",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001921845.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "2059",
        "protein_coding_gene_count": "1982",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-24",
    "dateModified": "2016-12-24",
    "datePublished": "2016-12-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus cuniculi"
        ],
        "sample_taxid": [
            "1432788"
        ],
        "sample_host_organism": [
            "Oryctolagus cuniculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "none; healthy"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Madrid"
        ],
        "sample_host_location_id": [],
        "data_size": "0.594 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2094853",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "340436",
        "N50 (bp)": "273814",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.4",
        "Number of CDSs": "2022",
        "Average Protein Length": "302.5",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptococcus cuniculi",
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                "accession": "GCA_001921845.1",
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                "species_taxid": 1432788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 688,
                "total_fragments": 688,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Streptococcus respiraculi",
                "strain": "strain=HTS25",
                "accession": "GCA_003595525.1",
                "taxid": 2021971,
                "species_taxid": 2021971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1814,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus acidominimus",
                "strain": "strain=CCUG 27296",
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                "species_taxid": 1326,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus acidominimus",
                "strain": "strain=NCTC12957",
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                "species_taxid": 1326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9048,
                "matched_fragments": 462,
                "total_fragments": 688,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus marmotae",
                "strain": "strain=HTS5",
                "accession": "GCA_001623565.1",
                "taxid": 1825069,
                "species_taxid": 1825069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9672,
                "matched_fragments": 422,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus azizii",
                "strain": "strain=12-5202",
                "accession": "GCA_001984715.1",
                "taxid": 1579424,
                "species_taxid": 1579424,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.382,
                "matched_fragments": 406,
                "total_fragments": 688,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasuis",
                "strain": "strain=SUT-286",
                "accession": "GCA_021654455.1",
                "taxid": 1501662,
                "species_taxid": 1501662,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6723,
                "matched_fragments": 145,
                "total_fragments": 688,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus oriscaviae",
                "strain": "strain=HKU75",
                "accession": "GCA_018137985.1",
                "taxid": 2781599,
                "species_taxid": 2781599,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6027,
                "matched_fragments": 180,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equi subsp. ruminatorum",
                "strain": "strain=CECT 5772",
                "accession": "GCA_000706805.1",
                "taxid": 254358,
                "species_taxid": 1336,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7312,
                "matched_fragments": 74,
                "total_fragments": 688,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001921845.1",
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                "total_fragments": 688,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004570575.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001921825.1",
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            },
            {
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            },
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                "accession": "GCF_004569635.1",
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "cuniculi"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}