{ "type": "genome", "identifier": "GCF_001922985.1", "organism": "Teredinibacter waterburyi", "title": "Teredinibacter waterburyi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_001922985.1", "bioproject": "PRJNA224116", "biosample": "SAMN05956373", "wgs_master": "MRUH00000000.1", "refseq_category": "reference genome", "taxid": "1500538", "species_taxid": "1500538", "organism_name": "Teredinibacter waterburyi", "infraspecific_name": "strain=Bs02", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/28", "asm_name": "ASM192298v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_001922985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/922/985/GCF_001922985.1_ASM192298v1", 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"total_fragments": 1224, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Teredinibacter haidensis", "strain": "strain=Bs08", "accession": "GCA_014211975.1", "taxid": 2731755, "species_taxid": 2731755, "relation_to_type": "type", "validated": true, "ani": 77.2068, "matched_fragments": 111, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter purpureus", "strain": "strain=Bs12", "accession": "GCA_014217335.1", "taxid": 2731756, "species_taxid": 2731756, "relation_to_type": "type", "validated": true, "ani": 77.1644, "matched_fragments": 129, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter purpureus", "strain": "strain=Bs12", "accession": "GCA_000966245.1", "taxid": 2731756, "species_taxid": 2731756, "relation_to_type": "type", "validated": true, "ani": 77.1583, "matched_fragments": 128, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharophagus degradans", "strain": "strain=2-40", "accession": "GCA_000013665.1", "taxid": 86304, "species_taxid": 86304, "relation_to_type": "type", "validated": true, "ani": 76.6989, "matched_fragments": 92, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agaribacterium haliotis", "strain": "strain=feces2", "accession": "GCA_002312815.1", "taxid": 2013869, "species_taxid": 2013869, "relation_to_type": "type", "validated": true, "ani": 76.3994, "matched_fragments": 50, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Teredinibacter franksiae", "strain": "strain=Bsc2", "accession": "GCA_014218805.1", "taxid": 2761453, "species_taxid": 2761453, "relation_to_type": "type", "validated": true, "ani": 76.3909, "matched_fragments": 115, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011602365.1", "gtdb_species": "s__Pseudomaricurvus hydrocarbonicus", "ani": 76.3689, "matched_fragments": 50, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Pseudomaricurvus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001187555.1", "gtdb_species": "s__Gilvimarinus polysaccharolyticus", "ani": 76.2057, "matched_fragments": 50, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Gilvimarinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953825.1", "gtdb_species": "s__Cellvibrio sp000953825", "ani": 75.555, "matched_fragments": 53, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Cellvibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 32.5, "optimum_ph": 8.25, "genome_size": 5191361.429, "gc_content": 50.9, "coding_genes": 4172.332, "rRNA16S_genes": 3.0, "tRNA_genes": 40.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Teredinibacter", "waterburyi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }