{
    "type": "genome",
    "identifier": "GCF_001936615.1",
    "organism": "Desulfosporosinus metallidurans",
    "title": "Desulfosporosinus metallidurans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Bioengineering, Research Center of Biotechnology of RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001936615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05892169",
        "wgs_master": "MLBF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1888891",
        "species_taxid": "1888891",
        "organism_name": "Desulfosporosinus metallidurans",
        "infraspecific_name": "strain=OL",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/05",
        "asm_name": "ASM193661v1",
        "asm_submitter": "Institute of Bioengineering, Research Center of Biotechnology of RAS",
        "gbrs_paired_asm": "GCA_001936615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/936/615/GCF_001936615.1_ASM193661v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5292883",
        "genome_size_ungapped": "5292883",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "271",
        "contig_count": "271",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001936615.1-RS_2024_05_13",
        "annotation_date": "2024-05-13",
        "total_gene_count": "5357",
        "protein_coding_gene_count": "5104",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-05",
    "dateModified": "2017-01-05",
    "datePublished": "2017-01-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfosporosinus metallidurans"
        ],
        "sample_taxid": [
            "1888891"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.522 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5292883",
        "Number of Sequences": "271",
        "Longest Sequences (bp)": "273056",
        "N50 (bp)": "66901",
        "Gap Ratio (%)": "0.000019",
        "GCcontent (%)": "43.6",
        "Number of CDSs": "5195",
        "Average Protein Length": "280.7",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Desulfosporosinus metallidurans",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "species_taxid": 2018669,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 329936,
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                "matched_fragments": 494,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Desulfosporosinus youngiae",
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                "accession": "GCA_000244895.1",
                "taxid": 339862,
                "species_taxid": 339862,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus orientis",
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                "accession": "GCA_000235605.1",
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                "species_taxid": 1563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8668,
                "matched_fragments": 286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus hippei",
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                "accession": "GCA_900100785.1",
                "taxid": 569859,
                "species_taxid": 569859,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 295,
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                "ani_threshold": 95,
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            {
                "organism_name": "Desulfosporosinus acidiphilus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus meridiei",
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                "accession": "GCA_000231385.3",
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                "species_taxid": 79209,
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                "matched_fragments": 283,
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        ],
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                "mean_intra_species_ani": "N/A",
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}