{
    "type": "genome",
    "identifier": "GCF_001938565.1",
    "organism": "Rhodoferax antarcticus ANT.BR",
    "title": "Rhodoferax antarcticus ANT.BR",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Indiana Wesleyan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_001938565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05907728",
        "wgs_master": "MSYM00000000.1",
        "refseq_category": "na",
        "taxid": "1111071",
        "species_taxid": "81479",
        "organism_name": "Rhodoferax antarcticus ANT.BR",
        "infraspecific_name": "strain=ANT.BR",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/06",
        "asm_name": "ASM193856v1",
        "asm_submitter": "Indiana Wesleyan University",
        "gbrs_paired_asm": "GCA_001938565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/938/565/GCF_001938565.1_ASM193856v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4007233",
        "genome_size_ungapped": "4007233",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_001938565.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3980",
        "protein_coding_gene_count": "3776",
        "non_coding_gene_count": "73",
        "pubmed_id": "28230808"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-06",
    "dateModified": "2017-01-06",
    "datePublished": "2017-01-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodoferax antarcticus ANT.BR"
        ],
        "sample_taxid": [
            "1111071"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Cape Royds, Ross Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.123 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4007233",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "1059282",
        "N50 (bp)": "332335",
        "Gap Ratio (%)": "0.000050",
        "GCcontent (%)": "58.6",
        "Number of CDSs": "3949",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodoferax antarcticus",
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                "relation_to_type": "type",
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            },
            {
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                "validated": true,
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                "matched_fragments": 1262,
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            },
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                "status": "below_threshold"
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            {
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                "species_taxid": 28066,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax ferrireducens",
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                "accession": "GCA_000013605.1",
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                "species_taxid": 192843,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
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                "ani": 78.5159,
                "matched_fragments": 422,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga taeniospiralis",
                "strain": "strain=NBRC 102512",
                "accession": "GCA_001592305.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Acidovorax facilis",
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                "accession": "GCA_023913775.1",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
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                "validated": true,
                "ani": 77.47,
                "matched_fragments": 286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
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                "accession": "GCA_004681975.1",
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                "matched_fragments": 246,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
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                "accession": "GCA_009758015.1",
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                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_001938565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax",
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    "_bac2feature": {
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    "_genome_taxon": [
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        "antarcticus",
        "ANT.BR"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}